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Clc09G01830 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G01830
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr09:1513597..1513869
RNA-Seq ExpressionClc09G01830
SyntenyClc09G01830
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-2361.11Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES
        MK  AD  RREVE++ G++V+LKLRP+RQAS+ K+  EKLSPKYF PY++LER+GKVAYRL+LP +  IH VFHVSQLK+A+     ++S
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES

PKU61033.1 hypothetical protein MA16_Dca029063 [Dendrobium catenatum]6.1e-2363.95Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT
        MK  AD HRR++++EVGE VYLKLRP+RQ +VA R  EKLSP+YF PY++LER+G VAYRL LPP   IH VFHVSQL++A+   T
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT

PKU85171.1 hypothetical protein MA16_Dca023532 [Dendrobium catenatum]7.2e-2463.95Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT
        MK  AD HRR++++EVGE VYLKLRP+RQ +VA R  EKL+P+YFRPY++LE++G VAYRL LPP T IH VFHVSQL++A+   T
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT

TYK06572.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-2361.11Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES
        MK  AD  RREVE++ G++V+LKLRP+RQAS+ K+  EKLSPKYF PY++LER+GKVAYRL+LP +  IH VFHVSQLK+A+     ++S
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES

TYK24654.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-2361.11Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES
        MK  AD  RREVE++ G++V+LKLRP+RQAS+ K+  EKLSPKYF PY++LER+GKVAYRL+LP +  IH VFHVSQLK+A+     ++S
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES

TrEMBL top hitse value%identityAlignment
A0A2I0VCA0 Chromo domain-containing protein2.9e-2363.95Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT
        MK  AD HRR++++EVGE VYLKLRP+RQ +VA R  EKLSP+YF PY++LER+G VAYRL LPP   IH VFHVSQL++A+   T
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT

A0A2I0XB92 Uncharacterized protein3.5e-2463.95Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT
        MK  AD HRR++++EVGE VYLKLRP+RQ +VA R  EKL+P+YFRPY++LE++G VAYRL LPP T IH VFHVSQL++A+   T
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQT

A0A5A7UAE4 Ty3/gypsy retrotransposon protein2.9e-2361.11Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES
        MK  AD  RREVE++ G++V+LKLRP+RQAS+ K+  EKLSPKYF PY++LER+GKVAYRL+LP +  IH VFHVSQLK+A+     ++S
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES

A0A5D3C5N7 Ty3/gypsy retrotransposon protein2.9e-2361.11Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES
        MK  AD  RREVE++ G++V+LKLRP+RQAS+ K+  EKLSPKYF PY++LER+GKVAYRL+LP +  IH VFHVSQLK+A+     ++S
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES

A0A5D3DM31 Ty3/gypsy retrotransposon protein2.9e-2361.11Show/hide
Query:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES
        MK  AD  RREVE++ G++V+LKLRP+RQAS+ K+  EKLSPKYF PY++LER+GKVAYRL+LP +  IH VFHVSQLK+A+     ++S
Subjt:  MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCGCATGCAGACCACCATCGTCGAGAAGTAGAATATGAGGTTGGGGAACTAGTGTATCTCAAATTACGACCTCATCGTCAGGCGTCCGTCGCCAAGCGTACTTG
TGAAAAATTGTCTCCAAAGTACTTCAGGCCTTACCAAATTCTAGAGAGGGTTGGAAAGGTTGCTTACCGCCTTGATTTACCTCCCGACACCATGATTCACCTTGTATTCC
ACGTCTCTCAACTAAAACAAGCTTTGAGTAGCCAAACCCCGATAGAGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCGCATGCAGACCACCATCGTCGAGAAGTAGAATATGAGGTTGGGGAACTAGTGTATCTCAAATTACGACCTCATCGTCAGGCGTCCGTCGCCAAGCGTACTTG
TGAAAAATTGTCTCCAAAGTACTTCAGGCCTTACCAAATTCTAGAGAGGGTTGGAAAGGTTGCTTACCGCCTTGATTTACCTCCCGACACCATGATTCACCTTGTATTCC
ACGTCTCTCAACTAAAACAAGCTTTGAGTAGCCAAACCCCGATAGAGTCATAA
Protein sequenceShow/hide protein sequence
MKSHADHHRREVEYEVGELVYLKLRPHRQASVAKRTCEKLSPKYFRPYQILERVGKVAYRLDLPPDTMIHLVFHVSQLKQALSSQTPIES