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Clc09G02070 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02070
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionmalonate--CoA ligase
Genome locationClcChr09:1699774..1700332
RNA-Seq ExpressionClc09G02070
SyntenyClc09G02070
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0090410 - malonate catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0031956 - medium-chain fatty acid-CoA ligase activity (molecular function)
GO:0090409 - malonyl-CoA synthetase activity (molecular function)
InterPro domainsIPR025110 - AMP-binding enzyme, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593469.1 Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia]6.1e-3882.83Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SVIECCVLGLPDKD GERVCAIIVL PN+K T PD+SKP MSL +L TWAKDKLAPYKLPT+LLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

KAG7025812.1 Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-3882.83Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SVIECCVLGLPDKD GERVCAIIVL PN+K T PD+SKP MSL +L TWAKDKLAPYKLPT+LLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

XP_022964295.1 malonate--CoA ligase [Cucurbita moschata]1.0e-3781.82Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SVIECCVLGLPDKD GERVCAIIVL PN+K T PD+SKP MSL +L TWAKDKLAPYK+PT+LLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

XP_038904615.1 malonate--CoA ligase isoform X1 [Benincasa hispida]3.8e-4086.87Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SV+ECCVLGLPDKD GERVCAIIVLQPNTK T PDES PTMSL EL TWAKDKLAPYKLPTMLLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

XP_038904616.1 malonate--CoA ligase isoform X2 [Benincasa hispida]3.8e-4086.87Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SV+ECCVLGLPDKD GERVCAIIVLQPNTK T PDES PTMSL EL TWAKDKLAPYKLPTMLLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

TrEMBL top hitse value%identityAlignment
A0A1S3BSX8 malonate--CoA ligase isoform X26.6e-3882.83Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SV ECCVLGLPDKD GERVCAI+VLQ NTK T+PD S P+MSL EL TWAKDKLAPYKLPTMLLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

A0A1S3BUN8 malonate--CoA ligase isoform X16.6e-3882.83Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SV ECCVLGLPDKD GERVCAI+VLQ NTK T+PD S P+MSL EL TWAKDKLAPYKLPTMLLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

A0A5D3BWC7 Malonate--CoA ligase isoform X16.6e-3882.83Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SV ECCVLGLPDKD GERVCAI+VLQ NTK T+PD S P+MSL EL TWAKDKLAPYKLPTMLLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

A0A6J1HKE3 malonate--CoA ligase5.0e-3881.82Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SVIECCVLGLPDKD GERVCAIIVL PN+K T PD+SKP MSL +L TWAKDKLAPYK+PT+LLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

A0A6J1KFM3 malonate--CoA ligase5.0e-3881.82Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES+ILQH SVIECCVLGLPDKD GERVCAIIVL PN+K T PD+SKP MSL +L TWAKDKLAPYK+PT+LLLKD  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

SwissProt top hitse value%identityAlignment
M4IS90 Probable CoA ligase CCL84.1e-2966.67Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES++L+H +V ECCVLGLPDKD GE V AIIV     K    +ESKP +SL EL +WA+ KLAPYKLPT L L D  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

Q3URE1 Malonate--CoA ligase ACSF3, mitochondrial2.2e-1442.42Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        +K GGYK+SA EIE  +L H S+ +  V+G+PD   G+RV A++ LQ    ++  D          L  WA+  LAPY +P+ LLL +  P+N MGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

Q4G176 Malonate--CoA ligase ACSF3, mitochondrial3.2e-1338.38Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        +K GGYK+SA E+E  +L H S+ +  V+G+PD   G+RV A++ L+             ++S  EL  WA++ LAPY +P+ L+L +  P+N MGK++
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

Q58DN7 Malonate--CoA ligase ACSF3, mitochondrial5.8e-1542.42Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        +K GGYK+SA E+E ++L H S+ +  V+G+PD   G+RV A++ LQ             ++S  EL  WA+  LAPY +P+ LLL +  P+N MGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

Q8H151 Malonate--CoA ligase5.4e-2964.65Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES +L+H +V ECCVLGL D D GE V AII+ +   K    DESKP ++L EL  WAKDKLAPYKLPT LL+ +  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

Arabidopsis top hitse value%identityAlignment
AT1G20560.1 acyl activating enzyme 11.1e-0832.65Show/hide
Query:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVNCF
        GG  +S+ E+ES +  H  V+E  V+  PD+  GE  CA + L+  +K           S  EL ++ +D+L  Y  P  ++ +DL P+ + GKV  F
Subjt:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVNCF

AT1G20560.2 acyl activating enzyme 11.1e-0832.65Show/hide
Query:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVNCF
        GG  +S+ E+ES +  H  V+E  V+  PD+  GE  CA + L+  +K           S  EL ++ +D+L  Y  P  ++ +DL P+ + GKV  F
Subjt:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVNCF

AT1G68270.1 AMP-dependent synthetase and ligase family protein7.0e-0830.53Show/hide
Query:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKV
        GG  +S+ E+E+++ +H  V E  V+ +P +  GE  CA IVLQ        DE K      EL  + ++ L  +  P  ++  +  P+N  GK+
Subjt:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKV

AT3G16170.1 AMP-dependent synthetase and ligase family protein3.8e-3064.65Show/hide
Query:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN
        MKVGGYKLSA EIES +L+H +V ECCVLGL D D GE V AII+ +   K    DESKP ++L EL  WAKDKLAPYKLPT LL+ +  P+NAMGKVN
Subjt:  MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVN

AT3G48990.1 AMP-dependent synthetase and ligase family protein4.5e-0730.21Show/hide
Query:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERV-CAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKV
        GG K+S  E+++++L H  V +    G+PD+  GE + CA+I   P    T+ +E        ++  + K  LA +K+P  + + D  P+ A GK+
Subjt:  GGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERV-CAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTCGGAGGATATAAATTATCAGCATTTGAGATTGAATCCATGATTTTGCAGCATCTGTCTGTCATAGAATGTTGTGTGTTGGGATTACCAGACAAAGACCAAGG
AGAACGTGTTTGTGCAATTATTGTGCTTCAGCCTAACACAAAAATGACGATGCCTGATGAGTCCAAGCCTACTATGAGCTTACATGAACTCCCCACATGGGCTAAAGACA
AGCTTGCTCCATACAAGTTACCGACCATGTTATTGTTGAAGGACTTGCCGCCTCAAAACGCCATGGGAAAGGTAAATTGCTTCGCATTCCTTCATTCTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTCGGAGGATATAAATTATCAGCATTTGAGATTGAATCCATGATTTTGCAGCATCTGTCTGTCATAGAATGTTGTGTGTTGGGATTACCAGACAAAGACCAAGG
AGAACGTGTTTGTGCAATTATTGTGCTTCAGCCTAACACAAAAATGACGATGCCTGATGAGTCCAAGCCTACTATGAGCTTACATGAACTCCCCACATGGGCTAAAGACA
AGCTTGCTCCATACAAGTTACCGACCATGTTATTGTTGAAGGACTTGCCGCCTCAAAACGCCATGGGAAAGGTAAATTGCTTCGCATTCCTTCATTCTGTCTAA
Protein sequenceShow/hide protein sequence
MKVGGYKLSAFEIESMILQHLSVIECCVLGLPDKDQGERVCAIIVLQPNTKMTMPDESKPTMSLHELPTWAKDKLAPYKLPTMLLLKDLPPQNAMGKVNCFAFLHSV