; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G02100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S17, chloroplastic
Genome locationClcChr09:1734319..1735315
RNA-Seq ExpressionClc09G02100
SyntenyClc09G02100
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059310.1 30S ribosomal protein S17 [Cucumis melo var. makuwa]8.4e-7191.52Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK   S SPSP ASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ
        KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ

XP_004141765.1 30S ribosomal protein S17, chloroplastic [Cucumis sativus]2.9e-7191.52Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M  TLTSSSLLQIPP+Q L KLSISSSFLHGSTPLSFLSKPS S SP P  SQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ
        KKYQAHDPDNQF+VGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGG+ GE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ

XP_008462167.1 PREDICTED: 30S ribosomal protein S17, chloroplastic [Cucumis melo]9.9e-7292.12Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK  PS SPSP ASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ
        KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]1.5e-6786.5Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M ATL+ SS LQIPPLQRL  LS+S+SFLHGS PLSFLSK    PSPS SASQTPNFLPSI+AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE
        KKYQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK KA E G GE+GIPLESQQ+
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE

XP_038898716.1 30S ribosomal protein S17, chloroplastic [Benincasa hispida]1.2e-6989.02Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M ATLTSSSLLQIPPLQRL KLSIS+SFLHGS+PL F SK      PSPSA QTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQEQ
        KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVP R+SKKKA E GDGE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQEQ

TrEMBL top hitse value%identityAlignment
A0A0A0K952 Uncharacterized protein1.4e-7191.52Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M  TLTSSSLLQIPP+Q L KLSISSSFLHGSTPLSFLSKPS S SP P  SQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ
        KKYQAHDPDNQF+VGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGG+ GE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ

A0A1S3CGC8 30S ribosomal protein S17, chloroplastic4.8e-7292.12Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK  PS SPSP ASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ
        KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ

A0A5A7UW29 30S ribosomal protein S17, chloroplastic4.1e-7191.52Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M  TLTSSSLLQIPPLQ L KLSISSSFLHGSTPLSFLSK   S SPSP ASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ
        KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SKKKA EGG+ GE+GIPLESQQEQ
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGD-GEVGIPLESQQEQ

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like3.6e-6786.5Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M ATL+ SS LQIPPLQRL  LS+S+SFLHGS PLSFLSK    PSPS SASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE
        KKYQAHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK KA E G GE+ IPLESQQ+
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE

A0A6J1KMI9 30S ribosomal protein S17, chloroplastic1.0e-6684.05Show/hide
Query:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
        M+ATLT SS+LQIPPLQR  KLS+S+SFLHGSTPLSFLSKP+PSP       QT NFLPSIRAM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK
Subjt:  MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIK

Query:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE
        KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSK+K  E   G++GIPLESQQ+
Subjt:  KKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQE

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic2.4e-4467.36Show/hide
Query:  LNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFV
        L  L +SS F HGSTPLS LSKP+  P+      + P  +P IRAM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V
Subjt:  LNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFV

Query:  ELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQ
         LEK RPISK K+F+A+PV AR + +KA  GGD  +G+PLESQQ
Subjt:  ELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)2.7e-3560.47Show/hide
Query:  LSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLA
        L+  S P  SP         P   P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA
Subjt:  LSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLA

Query:  IPVPARNSKKKAVEGGDGEVGIPLESQQE
        +P P+R SKK    G  GE+GIPL+SQQE
Subjt:  IPVPARNSKKKAVEGGDGEVGIPLESQQE

P82137 30S ribosomal protein S17, chloroplastic3.0e-3961.11Show/hide
Query:  SSSLLQIPPLQRLNKLSISSSFLHG-STPLSFL-SKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        S SLL+ PPL   N     + FLHG +T LS L S  + S S SP +S T    P I+AMRS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQ
Subjt:  SSSLLQIPPLQRLNKLSISSSFLHG-STPLSFL-SKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KKKAVEGGDGEVGIPLESQQE
        AHDPDNQFKVGD+V+L+KCRPISK KTFLA+    R S   + K ++    E+GIPLESQ E
Subjt:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KKKAVEGGDGEVGIPLESQQE

Q9TJN6 30S ribosomal protein S17, chloroplastic6.3e-2958.14Show/hide
Query:  LSKPSPSPSPSPSASQTPNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAI
        LS P  S SP P    +    P++R  A R L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISK K FLAI
Subjt:  LSKPSPSPSPSPSASQTPNFLPSIR--AMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAI

Query:  PVPARNSKKKAVEGGDGEVGIPLESQQEQ
        P+P R++++K+      ++  PL+S  +Q
Subjt:  PVPARNSKKKAVEGGDGEVGIPLESQQEQ

Q9ZST1 30S ribosomal protein S17, chloroplastic4.1e-2863.11Show/hide
Query:  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLES
        I+A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FLA+P+P R++++K+      ++  PL+S
Subjt:  IRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLES

Query:  QQE
        Q +
Subjt:  QQE

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S171.7e-4567.36Show/hide
Query:  LNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFV
        L  L +SS F HGSTPLS LSKP+  P+      + P  +P IRAM+++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V
Subjt:  LNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFV

Query:  ELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQ
         LEK RPISK K+F+A+PV AR + +KA  GGD  +G+PLESQQ
Subjt:  ELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCAACTCTAACTTCCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAATAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATT
CCTCTCTAAGCCCTCACCCTCGCCTTCGCCTTCGCCATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCAATTAGAGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGCG
CCACCAACGACAAAACCGTCGCCGTGGAGGTCGTCCGATTAGCGCCTCATCCCAAATACAAGCGTCGCATCAGAATCAAGAAGAAGTACCAAGCCCACGATCCAGATAAC
CAGTTCAAGGTCGGAGACTTTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCGGCGAGGAATTCGAAGAAGAAAGCGGT
GGAAGGCGGTGATGGAGAGGTCGGAATTCCACTGGAGTCTCAGCAAGAACAGAATTGA
mRNA sequenceShow/hide mRNA sequence
TCCTCATCTCCCCCACTCAAAGAACAGAAAGGGAACCCTTCTTCTTATCTTCGTCTTCAATTCGGATAACCCAAAAATCCCTAAAAAAAAGATGTATGCAACTCTAACTT
CCTCATCCCTTCTTCAAATTCCTCCATTACAGAGGCTGAATAAGCTCTCAATTTCCTCCTCTTTCCTCCATGGCTCAACTCCTCTCTCATTCCTCTCTAAGCCCTCACCC
TCGCCTTCGCCTTCGCCATCGGCCTCCCAAACCCCCAATTTCCTCCCCTCAATTAGAGCCATGAGGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAAACCGT
CGCCGTGGAGGTCGTCCGATTAGCGCCTCATCCCAAATACAAGCGTCGCATCAGAATCAAGAAGAAGTACCAAGCCCACGATCCAGATAACCAGTTCAAGGTCGGAGACT
TTGTGGAGCTTGAAAAATGCCGTCCCATCAGTAAGATGAAGACGTTCCTGGCTATTCCGGTTCCGGCGAGGAATTCGAAGAAGAAAGCGGTGGAAGGCGGTGATGGAGAG
GTCGGAATTCCACTGGAGTCTCAGCAAGAACAGAATTGATGATGATGATGATGATGAAGAACTAATGTTGTTGCTGTTCAAATATTCTGGAGTATTGCGTTTGGTTTAGA
CAATAGTATATGATTTGAATTTCATCATCTTGTTAAAAAGAAAAAATTAATTGAATGGGATAGAATTATGATGAAATTTAAGGTGAAATTTCTATTATGTATATGGCCAA
CTTCAAGTGTTTTTTAGAACTAAAAAATATGAACACAAATCATGCATTGAATAATTTCAAGCCCT
Protein sequenceShow/hide protein sequence
MYATLTSSSLLQIPPLQRLNKLSISSSFLHGSTPLSFLSKPSPSPSPSPSASQTPNFLPSIRAMRSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDN
QFKVGDFVELEKCRPISKMKTFLAIPVPARNSKKKAVEGGDGEVGIPLESQQEQN