; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G02400 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02400
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionthionin-like protein 2
Genome locationClcChr09:1927059..1943231
RNA-Seq ExpressionClc09G02400
SyntenyClc09G02400
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575552.1 Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5163.92Show/hide
Query:  CLVMCGLICLTGPVKCALCIGKCLI----FPVGSNQGDNLSFCKLGCATSRCTKFLTNGHPVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADC
        C  +CGL CL+GP++CALCIG C+I     P+  N  +N  FCKLGCATSRCT+ L+N     GRSTASF KCYAKCF+ CAITPGI +GTCGA CLA C
Subjt:  CLVMCGLICLTGPVKCALCIGKCLI----FPVGSNQGDNLSFCKLGCATSRCTKFLTNGHPVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADC

Query:  LFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKCFDECA
        LFIAS+PMDFNHMDTHYFCKLGCATS+CTKFSTK DP   +          +C D CA
Subjt:  LFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKCFDECA

KAG6575557.1 Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3651.9Show/hide
Query:  CLVMCGLICLTGPVKCALCIGKCLI----FPVGSNQGDNLSFCKLGCATSRCTKFLTNGHPVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADC
        C  +CGL CL+GP++CALCIG C+I     P+  N  +N  FCKLGCATSRCT+ L+N                           GI +GTCGA CLA C
Subjt:  CLVMCGLICLTGPVKCALCIGKCLI----FPVGSNQGDNLSFCKLGCATSRCTKFLTNGHPVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADC

Query:  LFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKCFDECA
        LFIAS+PMDFNHMDTHYFCKLGCATS+CTKFSTK DP   +          +C D CA
Subjt:  LFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKCFDECA

XP_008461038.1 PREDICTED: beta-hordothionin-like [Cucumis melo]4.6e-3862.99Show/hide
Query:  MKSILVFCLVVSLVVVVKSE---------GAGNGNGNGGGSCYLSCILNDCRKGVFQCAVCIGKCAI--NLESYSMKDRQMDNRDFCKIGCSTSVCSKFA
        MKSI V CL++SL+VV KSE         G+GNGN NG   CY+SC+LNDCRKGVFQCAVC+GKCA+     SYS +  +MDN DFCKIGC+TS+C+KFA
Subjt:  MKSILVFCLVVSLVVVVKSE---------GAGNGNGNGGGSCYLSCILNDCRKGVFQCAVCIGKCAI--NLESYSMKDRQMDNRDFCKIGCSTSVCSKFA

Query:  ISDNQYSDEREVKACLNSCNQRCTDSM
        + +NQ+SDE+EVK C++SC+QRCTDSM
Subjt:  ISDNQYSDEREVKACLNSCNQRCTDSM

XP_023000407.1 thionin-like protein 2 [Cucurbita maxima]1.4e-3475Show/hide
Query:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC
        VAGRSTASFGKCYAKCF+VCAITPG+PIGTCG KCLADCLF+AS+P D NH+DTHYFCKLGCATSLCTKFSTK DP   +  +    C   C
Subjt:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC

XP_038899787.1 thionin-like protein 2 [Benincasa hispida]1.1e-3680.43Show/hide
Query:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC
        V GRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCL DCLFIASSP+DFNH+DTHYFCKLGCATSLCTKFSTKKDP   +  +    C   C
Subjt:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC

TrEMBL top hitse value%identityAlignment
A0A061GC54 To encode a PR protein, Belongs to the plant thionin family with the following members:, putative1.1e-2445.22Show/hide
Query:  VAGRSTASFG-KCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRD--CYSKCFDECA
        + G+STA     CYA CF+ C          C AKCL DC+   S+       DT YFCKLGCAT+LCT  STK+DP  G+S A   +  CY+ CF  C 
Subjt:  VAGRSTASFG-KCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRD--CYSKCFDECA

Query:  AKTPFIALHICAAKCMGECLINPPSPMASNHMDTHYFCKLGCATSLCTKFSTKENSG
        A  P      C  KC+  C++  P        DT YFCKLGCAT+LCT  STKE+ G
Subjt:  AKTPFIALHICAAKCMGECLINPPSPMASNHMDTHYFCKLGCATSLCTKFSTKENSG

A0A0A0KC18 Uncharacterized protein1.8e-3593.42Show/hide
Query:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDP
        VAGRSTASFGKCYAKCF+VCAITPGIP+GTCGAKCLADCLFIASSPMD N+MDTHYFCKLGCATS CTKFSTKKDP
Subjt:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDP

A0A1S3CDB8 beta-hordothionin-like2.2e-3862.99Show/hide
Query:  MKSILVFCLVVSLVVVVKSE---------GAGNGNGNGGGSCYLSCILNDCRKGVFQCAVCIGKCAI--NLESYSMKDRQMDNRDFCKIGCSTSVCSKFA
        MKSI V CL++SL+VV KSE         G+GNGN NG   CY+SC+LNDCRKGVFQCAVC+GKCA+     SYS +  +MDN DFCKIGC+TS+C+KFA
Subjt:  MKSILVFCLVVSLVVVVKSE---------GAGNGNGNGGGSCYLSCILNDCRKGVFQCAVCIGKCAI--NLESYSMKDRQMDNRDFCKIGCSTSVCSKFA

Query:  ISDNQYSDEREVKACLNSCNQRCTDSM
        + +NQ+SDE+EVK C++SC+QRCTDSM
Subjt:  ISDNQYSDEREVKACLNSCNQRCTDSM

A0A6J1DDL8 thionin-like protein 26.6e-3070.83Show/hide
Query:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLF-IASSPMDFN-HMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKCFD
        VAG+STASFGKCYAKCFVVCAITPGIP+GTC AKCL DCLF  AS+  DFN  +DT YFCKLGCATSLCTKFSTKKDP   +  +    C  KC +
Subjt:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLF-IASSPMDFN-HMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKCFD

A0A6J1KDK0 thionin-like protein 26.8e-3575Show/hide
Query:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC
        VAGRSTASFGKCYAKCF+VCAITPG+PIGTCG KCLADCLF+AS+P D NH+DTHYFCKLGCATSLCTKFSTK DP   +  +    C   C
Subjt:  VAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC

SwissProt top hitse value%identityAlignment
A8MRP4 Thionin-like protein 21.1e-0536.78Show/hide
Query:  FGKCYAKCFVVCAITPGIP-IGTCGAKCLADCLFIASSP-MDFNHMD-THYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC
        F +CY  C V C      P    C   C  +CL   S P +  N++D + YFCKLGCAT  C   S+ ++P   R  A    C +KC
Subjt:  FGKCYAKCFVVCAITPGIP-IGTCGAKCLADCLFIASSP-MDFNHMD-THYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC

Arabidopsis top hitse value%identityAlignment
AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.7.7e-0736.78Show/hide
Query:  FGKCYAKCFVVCAITPGIP-IGTCGAKCLADCLFIASSP-MDFNHMD-THYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC
        F +CY  C V C      P    C   C  +CL   S P +  N++D + YFCKLGCAT  C   S+ ++P   R  A    C +KC
Subjt:  FGKCYAKCFVVCAITPGIP-IGTCGAKCLADCLFIASSP-MDFNHMD-THYFCKLGCATSLCTKFSTKKDPVAGRSIAAFRDCYSKC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCAATTTTGGTATTTTGCTTGGTCGTGAGCTTAGTAGTTGTAGTGAAGTCGGAAGGCGCCGGAAACGGCAACGGCAACGGCGGCGGAAGTTGCTATTTAAGCTG
CATACTGAATGACTGCCGAAAGGGTGTGTTCCAATGTGCAGTTTGCATCGGAAAATGTGCAATAAACTTGGAGTCTTACTCAATGAAGGATAGACAAATGGACAATCGTG
ACTTCTGCAAGATTGGCTGTTCCACTTCTGTCTGCTCCAAGTTCGCCATCTCCGACAACCAATACTCAGATGAGAGGGAAGTGAAAGCTTGTCTGAATTCGTGCAATCAA
AGATGCACGGACAGTATGGTCCAGTGTGCAGTTTGCCTTCCACAATGTGCAATACAATCCTCCTCAATGCAAATGAACCAAATGGACAATCACTACTTCTGCAACCTTGG
CTGTTCCAAGTTCATCAACATCCAAAACCCACCTCACTTCTCCCTCTTCATCTTCTTTGACGGTTGGAATGAGCGGGCCGAAGACTCGGGCTTCTCCGGCGTCGGTAAGG
GCGGCGACTCCACCGTGTCGGGCGGCATAGATTGCCTTGTCATGTGCGGCTTGATCTGCTTAACTGGTCCTGTCAAATGTGCACTTTGTATTGGAAAATGTTTAATATTT
CCGGTGGGCTCCAACCAAGGGGACAATCTCTCCTTCTGCAAGCTTGGCTGTGCTACTTCTCGCTGCACCAAATTCCTCACCAATGGTCACCCAGTTGCTGGAAGATCCAC
AGCCTCATTTGGGAAGTGCTATGCGAAGTGCTTTGTAGTGTGTGCTATCACACCAGGCATTCCCATTGGCACTTGTGGCGCAAAGTGCTTGGCTGATTGCCTCTTCATTG
CATCTTCCCCTATGGATTTCAACCATATGGACACTCATTATTTCTGCAAACTTGGTTGTGCCACCTCTCTCTGCACCAAATTCAGCACAAAGAAAGACCCTGTTGCTGGA
AGATCCATAGCAGCATTTAGGGATTGCTATTCCAAGTGCTTTGATGAGTGTGCTGCCAAGACACCATTCATTGCCTTACACATTTGTGCTGCAAAGTGTATGGGTGAATG
CCTCATTAATCCACCTTCCCCAATGGCTTCCAACCATATGGACACTCATTACTTCTGCAAACTTGGTTGTGCCACTTCTCTTTGCACCAAATTCAGTACCAAGGAAAACT
CGGGTTAG
mRNA sequenceShow/hide mRNA sequence
GAAGGCAAAAGAGAAATTAATAGAAACCCAGAAAGGTGAGAGAGTTTGGGAAGTTAAGGTTGAAAAGAGGAAAAATGAAGTCAATTTTGGTATTTTGCTTGGTCGTGAGC
TTAGTAGTTGTAGTGAAGTCGGAAGGCGCCGGAAACGGCAACGGCAACGGCGGCGGAAGTTGCTATTTAAGCTGCATACTGAATGACTGCCGAAAGGGTGTGTTCCAATG
TGCAGTTTGCATCGGAAAATGTGCAATAAACTTGGAGTCTTACTCAATGAAGGATAGACAAATGGACAATCGTGACTTCTGCAAGATTGGCTGTTCCACTTCTGTCTGCT
CCAAGTTCGCCATCTCCGACAACCAATACTCAGATGAGAGGGAAGTGAAAGCTTGTCTGAATTCGTGCAATCAAAGATGCACGGACAGTATGGTCCAGTGTGCAGTTTGC
CTTCCACAATGTGCAATACAATCCTCCTCAATGCAAATGAACCAAATGGACAATCACTACTTCTGCAACCTTGGCTGTTCCAAGTTCATCAACATCCAAAACCCACCTCA
CTTCTCCCTCTTCATCTTCTTTGACGGTTGGAATGAGCGGGCCGAAGACTCGGGCTTCTCCGGCGTCGGTAAGGGCGGCGACTCCACCGTGTCGGGCGGCATAGATTGCC
TTGTCATGTGCGGCTTGATCTGCTTAACTGGTCCTGTCAAATGTGCACTTTGTATTGGAAAATGTTTAATATTTCCGGTGGGCTCCAACCAAGGGGACAATCTCTCCTTC
TGCAAGCTTGGCTGTGCTACTTCTCGCTGCACCAAATTCCTCACCAATGGTCACCCAGTTGCTGGAAGATCCACAGCCTCATTTGGGAAGTGCTATGCGAAGTGCTTTGT
AGTGTGTGCTATCACACCAGGCATTCCCATTGGCACTTGTGGCGCAAAGTGCTTGGCTGATTGCCTCTTCATTGCATCTTCCCCTATGGATTTCAACCATATGGACACTC
ATTATTTCTGCAAACTTGGTTGTGCCACCTCTCTCTGCACCAAATTCAGCACAAAGAAAGACCCTGTTGCTGGAAGATCCATAGCAGCATTTAGGGATTGCTATTCCAAG
TGCTTTGATGAGTGTGCTGCCAAGACACCATTCATTGCCTTACACATTTGTGCTGCAAAGTGTATGGGTGAATGCCTCATTAATCCACCTTCCCCAATGGCTTCCAACCA
TATGGACACTCATTACTTCTGCAAACTTGGTTGTGCCACTTCTCTTTGCACCAAATTCAGTACCAAGGAAAACTCGGGTTAG
Protein sequenceShow/hide protein sequence
MKSILVFCLVVSLVVVVKSEGAGNGNGNGGGSCYLSCILNDCRKGVFQCAVCIGKCAINLESYSMKDRQMDNRDFCKIGCSTSVCSKFAISDNQYSDEREVKACLNSCNQ
RCTDSMVQCAVCLPQCAIQSSSMQMNQMDNHYFCNLGCSKFINIQNPPHFSLFIFFDGWNERAEDSGFSGVGKGGDSTVSGGIDCLVMCGLICLTGPVKCALCIGKCLIF
PVGSNQGDNLSFCKLGCATSRCTKFLTNGHPVAGRSTASFGKCYAKCFVVCAITPGIPIGTCGAKCLADCLFIASSPMDFNHMDTHYFCKLGCATSLCTKFSTKKDPVAG
RSIAAFRDCYSKCFDECAAKTPFIALHICAAKCMGECLINPPSPMASNHMDTHYFCKLGCATSLCTKFSTKENSG