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Clc09G02700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description(6-4)DNA photolyase
Genome locationClcChr09:2210720..2213052
RNA-Seq ExpressionClc09G02700
SyntenyClc09G02700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461069.1 PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo]1.8e-4992.31Show/hide
Query:  MATNLAVFHPAPIRASSS-SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFH
        MATN AVFHP PIRASSS SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSAAE QSVQNAD ELDGGRT SRFAPGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLAVFHPAPIRASSS-SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLS
        DIMYHSAIASRLASDLS
Subjt:  DIMYHSAIASRLASDLS
XP_022960101.1 uncharacterized protein LOC111460952 [Cucurbita moschata]7.5e-4888.7Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MATNL VFH APIRA  SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSAA+Q VQNAD ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDI
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDLS
        MYHSAIASRLASDLS
Subjt:  MYHSAIASRLASDLS
XP_023004861.1 uncharacterized protein LOC111498038 [Cucurbita maxima]7.5e-4888.7Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MATNL VFH APIRA  SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSAA+Q VQNAD ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDI
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDLS
        MYHSAIASRLASDLS
Subjt:  MYHSAIASRLASDLS
XP_023514525.1 uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]1.3e-4788.7Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MATNL VFH APIRA  SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSAA+Q VQNAD ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDI
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDLS
        MYHSAIASRLASDLS
Subjt:  MYHSAIASRLASDLS
XP_038898524.1 uncharacterized protein LOC120086132 [Benincasa hispida]1.2e-5093.04Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MATNLAVFHPAPIRA  SSSGKSEPNRRKA APKWWSPIFGWSSEPDYV+SSAAEQSV NA+ EL+GGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDLS
        MYHSAIASRLASDLS
Subjt:  MYHSAIASRLASDLS
TrEMBL top hitse value%identityAlignment
A0A0A0K8X0 Uncharacterized protein1.2e-4685.95Show/hide
Query:  MATNLAVFHPAPIRA-----SSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLES
        MATN AVFHPAPI A     SSSSSGK +PNR  AAAPKWWSPIFGWSSEPDYVVSSAAE QS+QNAD EL GGR RSRFAPGCFTEEKAKLLRMKT ES
Subjt:  MATNLAVFHPAPIRA-----SSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLES

Query:  STFHDIMYHSAIASRLASDLS
        STFHDIMYHSAIASRLASDLS
Subjt:  STFHDIMYHSAIASRLASDLS
A0A1S3CEC0 uncharacterized protein LOC1034997708.6e-5092.31Show/hide
Query:  MATNLAVFHPAPIRASSS-SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFH
        MATN AVFHP PIRASSS SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSAAE QSVQNAD ELDGGRT SRFAPGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLAVFHPAPIRASSS-SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLS
        DIMYHSAIASRLASDLS
Subjt:  DIMYHSAIASRLASDLS
A0A5D3CF29 Uncharacterized protein8.6e-5092.31Show/hide
Query:  MATNLAVFHPAPIRASSS-SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFH
        MATN AVFHP PIRASSS SSGKS+PNRR AA PKWWSPIFGWSSEPDYVVSSAAE QSVQNAD ELDGGRT SRFAPGCFTEEKAKLLRMKTLESSTFH
Subjt:  MATNLAVFHPAPIRASSS-SSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAE-QSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFH

Query:  DIMYHSAIASRLASDLS
        DIMYHSAIASRLASDLS
Subjt:  DIMYHSAIASRLASDLS
A0A6J1H6P9 uncharacterized protein LOC1114609523.6e-4888.7Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MATNL VFH APIRA  SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSAA+Q VQNAD ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDI
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDLS
        MYHSAIASRLASDLS
Subjt:  MYHSAIASRLASDLS
A0A6J1KTB2 uncharacterized protein LOC1114980383.6e-4888.7Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI
        MATNL VFH APIRA  SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDY+ SSAA+Q VQNAD ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDI
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDI

Query:  MYHSAIASRLASDLS
        MYHSAIASRLASDLS
Subjt:  MYHSAIASRLASDLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52720.1 unknown protein1.3e-2148.08Show/hide
Query:  PIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLA
        P   +SS SG   P++ +  +  WW+P+FG  S+PDY+   ++  +V     ++ G  +  +F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLA
Subjt:  PIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLA

Query:  SDLS
        SD++
Subjt:  SDLS
AT3G15630.1 unknown protein1.4e-2048.74Show/hide
Query:  MATNLAVFHPAPIRASSSSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHD
        MAT ++    + IRASS    +S+P R+K  ++  WW+P+FG SSEPDYV         +  +LE D  +   R    C TEEKAK LR KT E+STFHD
Subjt:  MATNLAVFHPAPIRASSSSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHD

Query:  IMYHSAIASRLASDLSASR
        +MYHSAIASRLASD+   +
Subjt:  IMYHSAIASRLASDLSASR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCAATCTTGCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTTCTGGAAAATCTGAACCTAATCGCCGGAAGGCCGCCGCGCCAAAGTGGTGGTC
GCCGATCTTCGGCTGGTCATCCGAACCGGACTACGTCGTTTCTTCCGCCGCGGAACAGTCGGTTCAGAATGCCGATCTGGAGCTCGACGGTGGAAGAACCAGATCCAGAT
TCGCGCCTGGATGCTTCACGGAGGAGAAGGCGAAACTGCTCCGAATGAAAACGCTGGAGAGCTCCACTTTTCACGACATTATGTACCATTCGGCGATCGCGTCGCGTCTC
GCTTCCGATTTATCAGCTTCCAGAAGCTCATTTGGGATTTGCCAGATCAGCTCCACATCAATTAATTTGCCACAGATTAGCTTCCAGAAGCTCATTTTGGGATTTGCCAG
ATCAGGTTCACATCAACTGCCAATTGGTGATAAGTCATTAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCAATCTTGCCGTTTTCCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTTCTGGAAAATCTGAACCTAATCGCCGGAAGGCCGCCGCGCCAAAGTGGTGGTC
GCCGATCTTCGGCTGGTCATCCGAACCGGACTACGTCGTTTCTTCCGCCGCGGAACAGTCGGTTCAGAATGCCGATCTGGAGCTCGACGGTGGAAGAACCAGATCCAGAT
TCGCGCCTGGATGCTTCACGGAGGAGAAGGCGAAACTGCTCCGAATGAAAACGCTGGAGAGCTCCACTTTTCACGACATTATGTACCATTCGGCGATCGCGTCGCGTCTC
GCTTCCGATTTATCAGCTTCCAGAAGCTCATTTGGGATTTGCCAGATCAGCTCCACATCAATTAATTTGCCACAGATTAGCTTCCAGAAGCTCATTTTGGGATTTGCCAG
ATCAGGTTCACATCAACTGCCAATTGGTGATAAGTCATTAAATTGA
Protein sequenceShow/hide protein sequence
MATNLAVFHPAPIRASSSSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYVVSSAAEQSVQNADLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRL
ASDLSASRSSFGICQISSTSINLPQISFQKLILGFARSGSHQLPIGDKSLN