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Clc09G02730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description(6-4)DNA photolyase
Genome locationClcChr09:2220869..2223935
RNA-Seq ExpressionClc09G02730
SyntenyClc09G02730
Gene Ontology termsGO:0009411 - response to UV (biological process)
GO:0032922 - circadian regulation of gene expression (biological process)
GO:0043153 - entrainment of circadian clock by photoperiod (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003914 - DNA (6-4) photolyase activity (molecular function)
GO:0071949 - FAD binding (molecular function)
InterPro domainsIPR002081 - Cryptochrome/DNA photolyase class 1
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold
IPR036155 - Cryptochrome/photolyase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058779.1 (6-4)DNA photolyase isoform X1 [Cucumis melo var. makuwa]9.2e-2144.91Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P               +  DARV   A A
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA

Query:  --VHIYEPWTAPLSMQKKAKGIITGKHYPKPVVSHDIATE---ERSYRCLDVKDPAPSTSILQLPGI
          + ++ P +  L        II  K+   P +S+    +   E S+ C  +     ST++  LP +
Subjt:  --VHIYEPWTAPLSMQKKAKGIITGKHYPKPVVSHDIATE---ERSYRCLDVKDPAPSTSILQLPGI

TYK10573.1 (6-4)DNA photolyase isoform X1 [Cucumis melo var. makuwa]7.8e-2076.39Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

XP_008461072.1 PREDICTED: (6-4)DNA photolyase isoform X1 [Cucumis melo]7.8e-2076.39Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

XP_022959592.1 (6-4)DNA photolyase [Cucurbita moschata]4.6e-2056.48Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA
        M+PNP+AFSPGSSRAGL     LL+SLVD D+NLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P               +  D+RV  +A A
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA

Query:  --VHIYEP
          V ++ P
Subjt:  --VHIYEP

XP_038896172.1 (6-4)DNA photolyase [Benincasa hispida]3.5e-2076.39Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV+K CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

TrEMBL top hitse value%identityAlignment
A0A1S3CDW6 (6-4)DNA photolyase isoform X13.8e-2076.39Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

A0A5A7UZ31 (6-4)DNA photolyase isoform X14.5e-2144.91Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P               +  DARV   A A
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA

Query:  --VHIYEPWTAPLSMQKKAKGIITGKHYPKPVVSHDIATE---ERSYRCLDVKDPAPSTSILQLPGI
          + ++ P +  L        II  K+   P +S+    +   E S+ C  +     ST++  LP +
Subjt:  --VHIYEPWTAPLSMQKKAKGIITGKHYPKPVVSHDIATE---ERSYRCLDVKDPAPSTSILQLPGI

A0A5D3CFB1 (6-4)DNA photolyase isoform X13.8e-2076.39Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        MEP+P+AFSPGSSRAGL     LL+SLVD DLNLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

A0A6J1H4Z1 (6-4)DNA photolyase2.2e-2056.48Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA
        M+PNP+AFSPGSSRAGL     LL+SLVD D+NLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P               +  D+RV  +A A
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA

Query:  --VHIYEP
          V ++ P
Subjt:  --VHIYEP

A0A6J1KRI5 (6-4)DNA photolyase8.4e-2055.56Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA
        M+P+P+AFSPGSSRAGL     LL+SLVD D+NLKKLGS LL+LHGEP EV I CLEEWNV K CFEYDT+P               +  D+RV  +A A
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQA

Query:  --VHIYEP
          V ++ P
Subjt:  --VHIYEP

SwissProt top hitse value%identityAlignment
O48652 (6-4)DNA photolyase1.9e-1661.11Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        ME +P+AFSPGSSRAG+     LL+SL D D +LKKLGS LL+  GEP EV + CL+EW V + CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

Q0E2Y1 (6-4)DNA photolyase1.4e-0837.5Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLH----GEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTR
        + P+  A SPGS+RAG+     LL+SL D D  L++LGS LLLL     G+ +      L++WN+ K CFE DTEP  L+             RD +V  
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLH----GEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTR

Query:  YAQA--VHIYEP
        +A A  + ++ P
Subjt:  YAQA--VHIYEP

Q16526 Cryptochrome-17.9e-0746.77Show/hide
Query:  GSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        GSS  G+     LLQ L D D NL+KL S L ++ G+P++VF    +EWN+ K   EYD+EP
Subjt:  GSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

Q5IZC5 Cryptochrome-17.9e-0746.77Show/hide
Query:  GSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        GSS  G+     LLQ L D D NL+KL S L ++ G+P++VF    +EWN+ K   EYD+EP
Subjt:  GSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

Q70AD6 Cryptochrome-12.7e-0748.39Show/hide
Query:  GSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        GSS  G+     LLQ L D D NL+KL S LL++ G+P++VF    +EWN+ K   EYD+EP
Subjt:  GSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

Arabidopsis top hitse value%identityAlignment
AT3G15620.1 DNA photolyase family protein1.3e-1761.11Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        ME +P+AFSPGSSRAG+     LL+SL D D +LKKLGS LL+  GEP EV + CL+EW V + CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP

AT3G15620.2 DNA photolyase family protein1.3e-1761.11Show/hide
Query:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP
        ME +P+AFSPGSSRAG+     LL+SL D D +LKKLGS LL+  GEP EV + CL+EW V + CFEYDT+P
Subjt:  MEPNPTAFSPGSSRAGL-----LLQSLVD-DLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTAATCCCACTGCGTTTTCACCGGGATCGTCTAGGGCTGGACTTCTTCTTCAGAGTCTTGTGGACGATTTGAACCTCAAGAAGCTCGGCTCGTGCTTGTTGCT
TCTCCACGGGGAGCCTAGCGAGGTCTTCATTCCCTGCTTGGAAGAGTGGAATGTCCACAAGTTCTGCTTTGAGTATGATACAGAACCCTCCTTACTATCAAGTTTAAAGT
TAGGCGATTCTTTTGTCAATATTGAGTTAAGAGATGCAAGAGTGACCAGATATGCCCAAGCAGTACACATATATGAGCCATGGACAGCTCCTCTCAGCATGCAAAAGAAA
GCAAAGGGCATCATCACTGGTAAACATTACCCAAAGCCAGTGGTATCCCATGATATAGCTACTGAAGAACGAAGCTACAGGTGTTTAGATGTTAAAGATCCAGCTCCATC
TACTTCAATTCTTCAACTCCCAGGCATTCTTTATGCAAGCCCTGTTGTTGAACTCTCGAAACTGGTTGATGTTTCTCAGAATTCAGTTCCAAAATGCACTTGTCTAACTC
TTCTTTCTGCTGCAACTAGCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTAATCCCACTGCGTTTTCACCGGGATCGTCTAGGGCTGGACTTCTTCTTCAGAGTCTTGTGGACGATTTGAACCTCAAGAAGCTCGGCTCGTGCTTGTTGCT
TCTCCACGGGGAGCCTAGCGAGGTCTTCATTCCCTGCTTGGAAGAGTGGAATGTCCACAAGTTCTGCTTTGAGTATGATACAGAACCCTCCTTACTATCAAGTTTAAAGT
TAGGCGATTCTTTTGTCAATATTGAGTTAAGAGATGCAAGAGTGACCAGATATGCCCAAGCAGTACACATATATGAGCCATGGACAGCTCCTCTCAGCATGCAAAAGAAA
GCAAAGGGCATCATCACTGGTAAACATTACCCAAAGCCAGTGGTATCCCATGATATAGCTACTGAAGAACGAAGCTACAGGTGTTTAGATGTTAAAGATCCAGCTCCATC
TACTTCAATTCTTCAACTCCCAGGCATTCTTTATGCAAGCCCTGTTGTTGAACTCTCGAAACTGGTTGATGTTTCTCAGAATTCAGTTCCAAAATGCACTTGTCTAACTC
TTCTTTCTGCTGCAACTAGCCAATAG
Protein sequenceShow/hide protein sequence
MEPNPTAFSPGSSRAGLLLQSLVDDLNLKKLGSCLLLLHGEPSEVFIPCLEEWNVHKFCFEYDTEPSLLSSLKLGDSFVNIELRDARVTRYAQAVHIYEPWTAPLSMQKK
AKGIITGKHYPKPVVSHDIATEERSYRCLDVKDPAPSTSILQLPGILYASPVVELSKLVDVSQNSVPKCTCLTLLSAATSQ