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Clc09G02780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description39S ribosomal protein L41-A, mitochondrial-like
Genome locationClcChr09:2242296..2248679
RNA-Seq ExpressionClc09G02780
SyntenyClc09G02780
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR019189 - Ribosomal protein L27/L41, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608261.1 39S ribosomal protein L41-A, mitochondrial-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3187.34Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGK
        ++MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FKLKPYVSQCPIE      G+
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGK
XP_004135839.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus]2.9e-3194.44Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
        + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FKLKPYVSQCPIEL
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
XP_008461075.1 PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo]5.8e-3294.52Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
        + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FKLKPYVSQCPIELN
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
XP_022982189.1 39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima]1.7e-3187.34Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGK
        ++MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FKLKPYVSQCPIE      G+
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGK
XP_038897038.1 39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida]7.5e-3295.83Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
        +AMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FKLKPYVSQCPIE+
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
TrEMBL top hitse value%identityAlignment
A0A0A0KBX4 Uncharacterized protein1.4e-3194.44Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
        + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FKLKPYVSQCPIEL
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
A0A1S3CEC5 39S ribosomal protein L41-A, mitochondrial-like2.8e-3294.52Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
        + MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDL+ FKLKPYVSQCPIELN
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
A0A2C9WE14 Uncharacterized protein3.1e-3193.06Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
        +AMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPNYVVPDLT FKLKPYVSQCP E+
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
A0A6J1CNE9 39S ribosomal protein L41-A, mitochondrial1.8e-3193.06Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
        +AMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNY+VPDLT FKLKPYVSQCP E+
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIEL
A0A6J1J3V5 39S ribosomal protein L41-A, mitochondrial-like8.1e-3287.34Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGK
        ++MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLT FKLKPYVSQCPIE      G+
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGK
SwissProt top hitse value%identityAlignment
P36526 54S ribosomal protein L27, mitochondrial3.9e-0740Show/hide
Query:  LSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRG
        L++K+  +  YKG      G HT+ GGYV+  +K+  YV PD+ +F+LKPYV+     L H+ +G
Subjt:  LSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRG
Q5BJX1 39S ribosomal protein L41, mitochondrial7.9e-0851.92Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
        +SKR PR + K +  K TGF+T +  +V + E +P +VVPDLT FKLKPYV+
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
Q6DJI4 39S ribosomal protein L41-A, mitochondrial3.5e-0853.85Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
        +SK+ P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
Q6INF3 39S ribosomal protein L41-B, mitochondrial7.9e-0853.85Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
        +SK  P  Y KG+  K  G+ T  G +V V E +P +VVPDLT FKLKPYVS
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
Q9CQN7 39S ribosomal protein L41, mitochondrial7.9e-0850Show/hide
Query:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
        +SKR PR + K +  K TG +T    +V + E +P +VVPDLT FKLKPYV+
Subjt:  SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVS
Arabidopsis top hitse value%identityAlignment
AT4G09012.1 Mitochondrial ribosomal protein L272.2e-2980.82Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
        +  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPNYVVPDLT FKLKPYVSQCP+++N
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
AT5G39800.1 Mitochondrial ribosomal protein L271.2e-3284.93Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
        ++ RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FKLKPYVSQCPI++N
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
AT5G40080.1 Mitochondrial ribosomal protein L272.8e-3283.56Show/hide
Query:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN
        ++ RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVVPDLT FKLKPYVSQCP+++N
Subjt:  QAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGAGTTTGAAGCCGAGGAAATTTCAAGCAATGCGGAGGAAGCGCACGTCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAA
AAATTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTGGATATGTAGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTCATTTCAAGCTGAAGCCTT
ATGTATCTCAATGTCCAATAGAACTAAATCATAAGCGAAGAGGTAAATATGAGCATCATGATGTTGGCAACGCCGTGGAGGGGACCCAGAAGGAAAAGACCATTAGTTGC
TTTTGTTGGATTCTTCTACTAGTTCAGATTCTAGTTCTTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGAGTTTGAAGCCGAGGAAATTTCAAGCAATGCGGAGGAAGCGCACGTCTTCTCTGGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTATAAGGGCAA
AAATTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTGGATATGTAGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGACTCATTTCAAGCTGAAGCCTT
ATGTATCTCAATGTCCAATAGAACTAAATCATAAGCGAAGAGGTAAATATGAGCATCATGATGTTGGCAACGCCGTGGAGGGGACCCAGAAGGAAAAGACCATTAGTTGC
TTTTGTTGGATTCTTCTACTAGTTCAGATTCTAGTTCTTTTGTAGGGTTGAAATTGAAACGAGTGAGGATCAAATGCTTATAAGACAAAAAGGCAAATCAAGAACAGAAA
TAGTTTGGAAGTCTGAGGACATTACATAGGCCTCTCGATTATAGGCAATTTGGTTTCAATCCAGGGGGAAATTTTGGGCGATGGAAGATATACAATCACATCGATTTGAG
CAATATAAAAATTTGTTTAAAAAACATGCCAATGTTATCCGCCCCCATTAACAAGTGAATGGAGATACTAAGCTGAAAAAGGCTGTTCTTCTCCACGCAACGTGAGACAA
CCAAAAGAAAATAATCCCAGAAGATGTTCTTCAAATCTGGCTTTAGCCAATAAGCATGGAACTGAAATTCAGAGTGGAAAGGAAAGATCTGAACAACCCGCAGCCCGGTT
TTGTCACCTGAAAAGCAGTGTAAAATGTTAGTCAAAAACTAAAGAACTCAGTCACTCATCCTTCAATACTCAAAAGGATCTAATAGGCAGCCAAATTTAGACCATCATCT
AAATGCAGGATCACAAATGATGCTATTGCTAGACTTGTTTTGAACTACTTGTCACATGGGATCTCATAGTAGACATACCTCTCATTGCGGTTTGATGACGACGACGATGA
CCACCTCTGATTTCGCCAACGAAGCCGAGAAGAATGAGGGCCACTCTTGTACATGCTTCCGTGTTGCCTACGTGGTTCAGGGGTGTGTGATGTACTCTCAAATGATCTTT
GGTGTCTATCAAATGATGTCTGACTCCGCCAACGCAATCGTCGGGATTGAGATGTACTCTCCACTGCCCTTTGCCGTTGATTCTGTCCATGCGGCTGAGTAGCTCGAGGC
ATATGATGAGACGATCTAAAATCCCGCCGTCGTGCATGTTGGGAATAAGGTCTAGTCTCCAACGACAAATTGTTTCCCACTCCAGTGGAAAAACTCGTATTGAGATCACG
TTGCACATTCTCCATTCTCTCTTGCAATGACTCTAAGTCTCTCAAAGCATCCAACATACTGTCTGAAAGCAAGTCCATGAGTGAATCATACATTTCAGTAACAAAGGATG
ACATCCAAAAACTAATAGCCCTTGTAAAACTTTCTTCATCACCGTCTACAGCATGGTTAGATTGCACTAGACTGAGAACATCCTCAAAATCCCTTTCACGCTGCCATCTC
ACCCAATCATGGTGACGCACTGGGTCCACCTCTGATGGCCGGACATATGGATGTTCAGACCTGGCATGCTTCCTGAGTTCAGAATATGTCCCGCTAAAATCACATATTTC
CAATGAACAACTCCTTACTTTGGAATTCATATATTGGCGAGCAGGCTCTACTACGATATAGCCATATATACCGCCCCGACAAAGAGGGCATATCAACTCTGATGCAAGCT
GATTCCTACCAAGTCCATTTTGTACAGCAGGTGGACATTCAACCATTTGTCTGTGAGAGACTGCACGTGTAAAAGGAATTTCTTGCAATTTGGTAATTAAAGGGATTGGT
CCATATAACTTACAGAATTGTTCAAAGCAGTTCGAGTGGCGATAGCTGTTGTTGCACATATAAGGCCTGCAACCTCTTTCGTGAGAGGAACATTTTAAAAGAACAGCATT
GTGGGGATGTTCCATGCAGATGGGGCACCTAGCTTCCTCCCATTCCTTAACATTTTGAGCTGATTCTAAGGAATTAACATTTTTACACGACTCGGTATGATTTTGGC
Protein sequenceShow/hide protein sequence
MVESLKPRKFQAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLTHFKLKPYVSQCPIELNHKRRGKYEHHDVGNAVEGTQKEKTISC
FCWILLLVQILVLL