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Clc09G02830 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G02830
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLate embryogenesis abundant protein 1
Genome locationClcChr09:2272122..2273034
RNA-Seq ExpressionClc09G02830
SyntenyClc09G02830
Gene Ontology termsNA
InterPro domainsIPR039624 - Stress-induced protein KIN1/KIN2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058773.1 late embryogenesis abundant protein 1 [Cucumis melo var. makuwa]4.0e-3275.83Show/hide
Query:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN------
        MASHQD +SHKAGE VGQAQVKKDE+++Q            + HDQSA QTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN      
Subjt:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN------

Query:  TNNPTTNPTTNPTNNPSTRI
        TNNPTTNP+ NPTNNPSTRI
Subjt:  TNNPTTNPTTNPTNNPSTRI

XP_004136082.1 late embryogenesis abundant protein 2 [Cucumis sativus]7.1e-2966.67Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQ-SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNT-----
        MASHQD+SHKA EIVGQAQVK+DE+++Q            +T DQ SAAQTA+DLKDQAA+FLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNT     
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQ-SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNT-----

Query:  -------------NNPTTNPTTNPTNNPSTRI
                     NNPT+NPT+NPT+NPSTRI
Subjt:  -------------NNPTTNPTTNPTNNPSTRI

XP_008461082.1 PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]1.3e-3076.32Show/hide
Query:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTS--NTNNP
        MASHQD +SHKAGE VGQAQVKKDE+++Q            + HDQSA QTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTS  N+NNP
Subjt:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTS--NTNNP

Query:  TTNPTTNPTNNPST
        T NPTTNP+NNP+T
Subjt:  TTNPTTNPTNNPST

XP_023000409.1 late embryogenesis abundant protein 1 [Cucurbita maxima]7.1e-2975Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKAST--HDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT
        MAS QDISH  GE+VGQAQVKKDE+++QA++AA +AKD AST     SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN    T
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKAST--HDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT

Query:  TNPTTNPT
         NPT  P+
Subjt:  TNPTTNPT

XP_038899752.1 late embryogenesis abundant protein 2-like [Benincasa hispida]9.6e-4290.27Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPTTN
        MASHQDISHKAGEIVGQAQVKKDEIL+QASHAAHD+KDKASTHDQS AQTAS+LKDQAANFLQQTGEQVKNMAQGAA+AVKNTLGMNTDNT NTN    N
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPTTN

Query:  PTTNPTNNPSTRI
        PT NPTNNPSTRI
Subjt:  PTTNPTNNPSTRI

TrEMBL top hitse value%identityAlignment
A0A0A0K8V2 Uncharacterized protein3.4e-2966.67Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQ-SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNT-----
        MASHQD+SHKA EIVGQAQVK+DE+++Q            +T DQ SAAQTA+DLKDQAA+FLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNT     
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQ-SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNT-----

Query:  -------------NNPTTNPTTNPTNNPSTRI
                     NNPT+NPT+NPT+NPSTRI
Subjt:  -------------NNPTTNPTTNPTNNPSTRI

A0A1S3CF46 late embryogenesis abundant protein 16.3e-3176.32Show/hide
Query:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTS--NTNNP
        MASHQD +SHKAGE VGQAQVKKDE+++Q            + HDQSA QTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTS  N+NNP
Subjt:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTS--NTNNP

Query:  TTNPTTNPTNNPST
        T NPTTNP+NNP+T
Subjt:  TTNPTTNPTNNPST

A0A5D3CF20 Late embryogenesis abundant protein 12.0e-3275.83Show/hide
Query:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN------
        MASHQD +SHKAGE VGQAQVKKDE+++Q            + HDQSA QTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN      
Subjt:  MASHQD-ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSN------

Query:  TNNPTTNPTTNPTNNPSTRI
        TNNPTTNP+ NPTNNPSTRI
Subjt:  TNNPTTNPTTNPTNNPSTRI

A0A6J1HHY8 late embryogenesis abundant protein 12.2e-2874.07Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKAST--HDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT
        MAS QDISH  GE VGQAQVKKDE+++QA+++A +AKD AST     SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN    T
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKAST--HDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT

Query:  TNPTTNPT
         NPT  P+
Subjt:  TNPTTNPT

A0A6J1KJU5 late embryogenesis abundant protein 13.4e-2975Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKAST--HDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT
        MAS QDISH  GE+VGQAQVKKDE+++QA++AA +AKD AST     SAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTD++SN    T
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKAST--HDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT

Query:  TNPTTNPT
         NPT  P+
Subjt:  TNPTTNPT

SwissProt top hitse value%identityAlignment
O49816 Late embryogenesis abundant protein 18.8e-0638.14Show/hide
Query:  ASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT
        A+  +    A     + Q   +   ++A      A++K S   QS  +TA   KD +A FLQQTGE+VK MAQGA +AVK T GM  D+    + PT
Subjt:  ASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT

O49817 Late embryogenesis abundant protein 23.9e-0647.22Show/hide
Query:  DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT
        ++A      AK+K S   QS  +TA   KD +A FLQQTGE+ K MAQGA +AVK T GM  D+    + PT
Subjt:  DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT

Q96270 Late embryogenesis abundant protein 74.8e-0431.33Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEIL----------------------DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANF-----------------
        MASHQ+ S+KAGE  G+AQ K  E +                       +A   A  AKDK S   Q+  + A + KD+  ++                 
Subjt:  MASHQDISHKAGEIVGQAQVKKDEIL----------------------DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANF-----------------

Query:  ----------------LQQTGEQVKNMAQGAAEAVKNTLGMNTD-----NTSNTNNPTTNPTTNPT
                        L QTGEQVK MA GA +AVK+TLG+ TD     + S+  + TT  TT  T
Subjt:  ----------------LQQTGEQVKNMAQGAAEAVKNTLGMNTD-----NTSNTNNPTTNPTTNPT

Arabidopsis top hitse value%identityAlignment
AT1G15415.1 The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol.1.2e-0538.39Show/hide
Query:  MASHQD--ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT
        MAS QD   S +AG+IVGQA VK+++  + +                           QA+ FLQQ GE+VK+MA  A+EAVKN LG+N DN     N  
Subjt:  MASHQD--ISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPT

Query:  TNPTTNPTNNPS
             NP N  S
Subjt:  TNPTTNPTNNPS

AT1G52680.1 late embryogenesis abundant protein-related / LEA protein-related8.1e-1547.46Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASD-----LKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTN
        M+S Q +SH AGE+ GQ Q+KK+E L+  SHA +   D   TH QS   +  D     L  QA++ +QQTG QVKNMAQGAA+AVKNTLGM    +  TN
Subjt:  MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASD-----LKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTN

Query:  NPTTNPTTNPTNNPSTRI
        +P++   T  +N P ++I
Subjt:  NPTTNPTTNPTNNPSTRI

AT1G52690.1 Late embryogenesis abundant protein (LEA) family protein3.4e-0531.33Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEIL----------------------DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANF-----------------
        MASHQ+ S+KAGE  G+AQ K  E +                       +A   A  AKDK S   Q+  + A + KD+  ++                 
Subjt:  MASHQDISHKAGEIVGQAQVKKDEIL----------------------DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANF-----------------

Query:  ----------------LQQTGEQVKNMAQGAAEAVKNTLGMNTD-----NTSNTNNPTTNPTTNPT
                        L QTGEQVK MA GA +AVK+TLG+ TD     + S+  + TT  TT  T
Subjt:  ----------------LQQTGEQVKNMAQGAAEAVKNTLGMNTD-----NTSNTNNPTTNPTTNPT

AT1G52690.2 Late embryogenesis abundant protein (LEA) family protein3.4e-0531.33Show/hide
Query:  MASHQDISHKAGEIVGQAQVKKDEIL----------------------DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANF-----------------
        MASHQ+ S+KAGE  G+AQ K  E +                       +A   A  AKDK S   Q+  + A + KD+  ++                 
Subjt:  MASHQDISHKAGEIVGQAQVKKDEIL----------------------DQASHAAHDAKDKASTHDQSAAQTASDLKDQAANF-----------------

Query:  ----------------LQQTGEQVKNMAQGAAEAVKNTLGMNTD-----NTSNTNNPTTNPTTNPT
                        L QTGEQVK MA GA +AVK+TLG+ TD     + S+  + TT  TT  T
Subjt:  ----------------LQQTGEQVKNMAQGAAEAVKNTLGMNTD-----NTSNTNNPTTNPTTNPT

AT4G13560.1 Late embryogenesis abundant protein (LEA) family protein1.6e-0740.4Show/hide
Query:  AGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDL----------------------KDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMN
        AG+  GQAQ K ++  + A   A  A DK +   QSA   A+DL                      ++QAA    QTGE VKNMAQGA + VKN+LGMN
Subjt:  AGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDL----------------------KDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGGCAAGCTCAGGTAAAGAAAGATGAGATTTTGGACCAAGCATCTCATGCAGCTCATGATGCCAA
AGACAAAGCATCTACGCATGACCAATCTGCCGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACGGGAGAGCAAGTGAAAAACATGGCAC
AAGGAGCAGCTGAAGCAGTAAAGAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAATCCAACCACCAACCCTACCACCAACCCTACCAACAATCCATCC
ACTAGAATTTAA
mRNA sequenceShow/hide mRNA sequence
TTTCAGTGCATCACTTTCATATTTTCATTTATTCATTTTTTTTCTTCCTTCTTTTCACTATCTTTTGAGTGTAAAAGAAAAAACAAAAAACACAATTCAGAAATGGCAAG
CCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGGCAAGCTCAGGTAAAGAAAGATGAGATTTTGGACCAAGCATCTCATGCAGCTCATGATGCCAAAGACAAAG
CATCTACGCATGACCAATCTGCCGCCCAAACTGCCTCTGACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACGGGAGAGCAAGTGAAAAACATGGCACAAGGAGCA
GCTGAAGCAGTAAAGAACACACTTGGGATGAACACTGATAACACTTCAAACACCAACAATCCAACCACCAACCCTACCACCAACCCTACCAACAATCCATCCACTAGAAT
TTAAAAGATGAAGTTTTGATTACTTCATTTTTTTTCCCTTCTTTTTTGGTGATTTAATTAATTTGCTTCTTTCATATGCCACAATGAAAATGAGCAAATGAAAGGTGAAA
TTAATTTCTGTATAAATAATTGAAAGGAAGAGTGTGATATATGGATCCCCTTCCTTTTCACAATTAATTAAATTTCTAGTTTTGTTGCCCTAATCTCTGACGTGTCCCTT
AATTTTGTTAGATACTTGCTTTACTATATTTATAATTATGAATTAAAATAATATATCTACTTGGC
Protein sequenceShow/hide protein sequence
MASHQDISHKAGEIVGQAQVKKDEILDQASHAAHDAKDKASTHDQSAAQTASDLKDQAANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNTNNPTTNPTTNPTNNPS
TRI