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Clc09G03340 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G03340
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionserine-rich protein-related
Genome locationClcChr09:2575948..2578648
RNA-Seq ExpressionClc09G03340
SyntenyClc09G03340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058731.1 uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa]1.3e-3179.81Show/hide
Query:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR
        MA KTASSSRLCLCAPTTHPGSFRCSLHRRPS +S KT   +PPP GSQSKA   TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

KAG6593379.1 hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia]7.3e-3076.77Show/hide
Query:  MATKTA-SSSRLCLCAPTTHPGSFRCSLHRRPSKASDK--TMPPPGSQSKAGTTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASDHRLAVS
        MA KTA SS RLCLCAPTTHPGSFRCSLHRR  KAS+K   +PPPG+QSKA +   LVKAFLMQ++KPSS DLQRRRNFQPKPSRFCN  ASD+ LAVS
Subjt:  MATKTA-SSSRLCLCAPTTHPGSFRCSLHRRPSKASDK--TMPPPGSQSKAGTTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASDHRLAVS

KAG7014157.1 hypothetical protein SDJN02_24331, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-3177.67Show/hide
Query:  PSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDH----LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASDHRL
        PSPMA KTASSSRLCLCAPT+HPGSFRCSLHRRP KASDKT    GSQSKA T       L K FLMQ +KPSSHDL RRRNFQPKPSRFCN  ASDHRL
Subjt:  PSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDH----LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASDHRL

Query:  AVS
         VS
Subjt:  AVS

KGN45240.1 hypothetical protein Csa_016736 [Cucumis sativus]3.3e-3078.1Show/hide
Query:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT--MPPP---GSQSKAG--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDH
        M  KTASSSRLCLCAPTTHPGSFRCSLHRR S +S KT  +PPP   GSQSKA   TTD HL+KAFLMQIVKPSSHDLQRR +F+PKPSRFC+VV ASD 
Subjt:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT--MPPP---GSQSKAG--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDH

Query:  RLAVS
        RLAVS
Subjt:  RLAVS

XP_008461151.1 PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo]5.1e-3178.85Show/hide
Query:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR
        M  KTASSSRLCLCAPTTHPGSFRCSLHRRPS +S KT   +PPP GSQSKA   TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

TrEMBL top hitse value%identityAlignment
A0A0A0K698 Uncharacterized protein1.6e-3078.1Show/hide
Query:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT--MPPP---GSQSKAG--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDH
        M  KTASSSRLCLCAPTTHPGSFRCSLHRR S +S KT  +PPP   GSQSKA   TTD HL+KAFLMQIVKPSSHDLQRR +F+PKPSRFC+VV ASD 
Subjt:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT--MPPP---GSQSKAG--TTD-HLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDH

Query:  RLAVS
        RLAVS
Subjt:  RLAVS

A0A1S3CDL4 putative UPF0481 protein At3g026452.7e-2287.3Show/hide
Query:  VPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYKFTKN
        VPKSLM+IDPDSYTPQE+AIGP HHW QELYEMER KIAAAKRAQKQLQSLKFHDLV K TK+
Subjt:  VPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYKFTKN

A0A1S3CEH6 uncharacterized protein LOC1034998222.5e-3178.85Show/hide
Query:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR
        M  KTASSSRLCLCAPTTHPGSFRCSLHRRPS +S KT   +PPP GSQSKA   TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

A0A5A7UZ19 Uncharacterized protein6.5e-3279.81Show/hide
Query:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR
        MA KTASSSRLCLCAPTTHPGSFRCSLHRRPS +S KT   +PPP GSQSKA   TTDH  +KAFLMQIVKPSSH LQRR NFQPKPSRFCN+V A D R
Subjt:  MATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKT---MPPP-GSQSKAG--TTDH-LVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVV-ASDHR

Query:  LAVS
        LAVS
Subjt:  LAVS

A0A6J1DD51 uncharacterized protein LOC1110193816.3e-2775.56Show/hide
Query:  MATKT----ASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV
        MATKT    AS+SRLCLCAPTTHPGSFRCSLHRRP KASDK+     S         LVKAFLMQI+KPSSHDLQRRRNFQPKPSRFCNV
Subjt:  MATKT----ASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNV

SwissProt top hitse value%identityAlignment
P0C897 Putative UPF0481 protein At3g026453.9e-1052.54Show/hide
Query:  VPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYK
        VPK+LM   PDSYTP  ++IGP H    EL+EMER K+  A++ + Q  S +FHDLV K
Subjt:  VPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYK

Arabidopsis top hitse value%identityAlignment
AT3G02645.1 Plant protein of unknown function (DUF247)2.8e-1152.54Show/hide
Query:  VPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYK
        VPK+LM   PDSYTP  ++IGP H    EL+EMER K+  A++ + Q  S +FHDLV K
Subjt:  VPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYK

AT5G11090.1 serine-rich protein-related2.1e-1131.54Show/hide
Query:  LKNGSLSPTEKEFPLNKNAEKAITQFSHADAVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHL--------
        L + S+SPT K   ++KN        SH   +              SR C+C+PTTHPGSFRCSLH+  +        P G  + + TT+ L        
Subjt:  LKNGSLSPTEKEFPLNKNAEKAITQFSHADAVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHL--------

Query:  -------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASD
                     V+  L  +++PSSH L+RR  +QP+PSR   +  +D
Subjt:  -------------VKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASD

AT5G20370.1 serine-rich protein-related4.2e-0730.22Show/hide
Query:  PLNKNAEKAITQFSHADAVATSPSPMATKTAS---SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPP--------------------------GSQS
        P NKN    +  +S      + P P     +S   + R CLC+PTTHPGSFRCS HRR      KT+                              S +
Subjt:  PLNKNAEKAITQFSHADAVATSPSPMATKTAS---SSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPP--------------------------GSQS

Query:  KAGT--TDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRF
        K G+   +   ++    + KPSS    RR  F+P+ SRF
Subjt:  KAGT--TDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRF

AT5G25280.1 serine-rich protein-related9.9e-0932.17Show/hide
Query:  AVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHL---------------------VKAFLMQIVKPSSHDLQ
        AV+++      K   S R C+C+PTTHPGSFRCSLH+  +        P G  + + TT+ L                     V+  L  +++PSSH L+
Subjt:  AVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHL---------------------VKAFLMQIVKPSSHDLQ

Query:  RRRNFQPKPSRFCNV
        RR  ++P+ SR  ++
Subjt:  RRRNFQPKPSRFCNV

AT5G25280.2 serine-rich protein-related9.9e-0932.17Show/hide
Query:  AVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHL---------------------VKAFLMQIVKPSSHDLQ
        AV+++      K   S R C+C+PTTHPGSFRCSLH+  +        P G  + + TT+ L                     V+  L  +++PSSH L+
Subjt:  AVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHL---------------------VKAFLMQIVKPSSHDLQ

Query:  RRRNFQPKPSRFCNV
        RR  ++P+ SR  ++
Subjt:  RRRNFQPKPSRFCNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATTCGATATGTCCCTAAGTCTCTTATGATCATCGATCCTGATTCCTATACTCCACAGGAAATTGCAATTGGTCCATGCCATCACTGGCCCCAAGAGTTGTACGA
GATGGAGAGGTGCAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGTCTCAAGTTTCACGATCTCGTTTACAAATTCACCAAAAATTTGGGTTGGTTCTCGT
TTTTAAACTTTTGGTCTGGTGGACCTGACCCACCTTTAAAGAATGGAAGCTTAAGTCCGACGGAAAAAGAGTTTCCATTAAATAAAAACGCCGAAAAAGCGATCACTCAA
TTCTCACATGCAGATGCAGTTGCAACTTCCCCGTCTCCAATGGCTACCAAAACCGCTTCCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCG
CTGCAGCCTCCACCGCCGTCCCTCGAAGGCCTCCGACAAAACAATGCCGCCGCCTGGAAGCCAATCGAAGGCGGGGACCACGGATCATCTCGTTAAGGCTTTTCTGATGC
AGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGAGGAATTTCCAGCCTAAACCTTCCCGATTCTGCAATGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATATTCGATATGTCCCTAAGTCTCTTATGATCATCGATCCTGATTCCTATACTCCACAGGAAATTGCAATTGGTCCATGCCATCACTGGCCCCAAGAGTTGTACGA
GATGGAGAGGTGCAAGATTGCTGCAGCCAAAAGAGCTCAAAAACAGCTCCAAAGTCTCAAGTTTCACGATCTCGTTTACAAATTCACCAAAAATTTGGGTTGGTTCTCGT
TTTTAAACTTTTGGTCTGGTGGACCTGACCCACCTTTAAAGAATGGAAGCTTAAGTCCGACGGAAAAAGAGTTTCCATTAAATAAAAACGCCGAAAAAGCGATCACTCAA
TTCTCACATGCAGATGCAGTTGCAACTTCCCCGTCTCCAATGGCTACCAAAACCGCTTCCTCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCG
CTGCAGCCTCCACCGCCGTCCCTCGAAGGCCTCCGACAAAACAATGCCGCCGCCTGGAAGCCAATCGAAGGCGGGGACCACGGATCATCTCGTTAAGGCTTTTCTGATGC
AGATCGTAAAGCCGTCGAGTCACGATCTCCAGAGACGGAGGAATTTCCAGCCTAAACCTTCCCGATTCTGCAATGTCGTCGCTTCGGATCATCGATTGGCTGTTTCTTGA
Protein sequenceShow/hide protein sequence
MHIRYVPKSLMIIDPDSYTPQEIAIGPCHHWPQELYEMERCKIAAAKRAQKQLQSLKFHDLVYKFTKNLGWFSFLNFWSGGPDPPLKNGSLSPTEKEFPLNKNAEKAITQ
FSHADAVATSPSPMATKTASSSRLCLCAPTTHPGSFRCSLHRRPSKASDKTMPPPGSQSKAGTTDHLVKAFLMQIVKPSSHDLQRRRNFQPKPSRFCNVVASDHRLAVS