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Clc09G03785 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G03785
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNuclear pore complex protein
Genome locationClcChr09:2905116..2906755
RNA-Seq ExpressionClc09G03785
SyntenyClc09G03785
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45194.1 hypothetical protein Csa_015637 [Cucumis sativus]8.4e-4495.7Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

XP_016902643.1 PREDICTED: uncharacterized protein LOC107991796 [Cucumis melo]3.8e-4496.77Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVSSRVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

XP_022143553.1 uncharacterized protein LOC111013423 [Momordica charantia]4.9e-4495.7Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQR FWRVSVWSNHAAAASS+TATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

XP_023548962.1 uncharacterized protein LOC111807461 [Cucurbita pepo subsp. pepo]4.2e-4394.62Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWL VS+RVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGH+PKRK R FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

XP_038900267.1 uncharacterized protein LOC120087349 [Benincasa hispida]7.6e-4597.85Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVS+RVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQR FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

TrEMBL top hitse value%identityAlignment
A0A0A0K8I7 Uncharacterized protein4.1e-4495.7Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

A0A1S4E346 uncharacterized protein LOC1079917961.8e-4496.77Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVSSRVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV HQPKRKQR FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

A0A5A7UWX2 Uncharacterized protein7.7e-4393.75Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNH---AAAASSYTATHA
        MELWHKMIFPVRRVWLAVSSRVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV HQPKRKQR FWRVSVWSNH   AAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNH---AAAASSYTATHA

A0A6J1CR01 uncharacterized protein LOC1110134232.4e-4495.7Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLAVS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQR FWRVSVWSNHAAAASS+TATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

A0A6J1JS76 uncharacterized protein LOC1114884375.9e-4393.55Show/hide
Query:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWL VS+RVRARKSGAGLLKLHDDVETCGYEDVKVMWE+LRRSESELVGH+PKRK R FWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G43150.1 unknown protein2.5e-0942.86Show/hide
Query:  ELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSES-ELVGHQPKRKQR
        E W+ M FP RR+W   + RV  R S  GLL+L  DV +C YED+ +MW +L ++E    V  Q +++QR
Subjt:  ELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSES-ELVGHQPKRKQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCTCTCGTGTTAGGGCTCGGAAAAGTGGAGCTGGACTTCTGAAGCTTCATGATGA
TGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCTGAGTCTGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACTGTTTTGGA
GAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCTTCTTACACTGCAACACATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCTCTCGTGTTAGGGCTCGGAAAAGTGGAGCTGGACTTCTGAAGCTTCATGATGA
TGTAGAAACTTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTACGTCGATCTGAGTCTGAGTTGGTCGGTCACCAACCGAAACGCAAGCAGCGACTGTTTTGGA
GAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCTTCTTACACTGCAACACATGCATGA
Protein sequenceShow/hide protein sequence
MELWHKMIFPVRRVWLAVSSRVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVGHQPKRKQRLFWRVSVWSNHAAAASSYTATHA