; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G03980 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G03980
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCitrate synthase
Genome locationClcChr09:3077987..3079906
RNA-Seq ExpressionClc09G03980
SyntenyClc09G03980
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575660.1 hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3042.17Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MASIFAAPPS+LNLTSRP+LIH AVLPSSIAGIQ+H+NA P PSFR                                                      
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                            YRN++GLELRQRS SITASNSSD NS IKEE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        GSSKA++DAQGPPFLTILAGIFVFSL+LW+ SSA  S+IGLVVKLI TK
Subjt:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

XP_022953425.1 uncharacterized protein LOC111455984 [Cucurbita moschata]9.8e-3142.17Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MASIF+APPS+LNLTSRP+LIH AVLPSSIAGIQ+H+NA P PSFR                                                      
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                            YRN++GLELRQRS SITASNSSDGNS IKEE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        GSSKA++DAQGPPFLTILAGIFVFSL+LW+ SSA  S+IGLVVKLI TK
Subjt:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

XP_023513741.1 uncharacterized protein LOC111778262 isoform X1 [Cucurbita pepo subsp. pepo]5.0e-3547.41Show/hide
Query:  MASIFAAPPSQLNLTS-RPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLR
        MAS+FAAPPSQL L+S RP+L H+A LP SI G++FH N  P PSFR                                   E LL+   SS      LR
Subjt:  MASIFAAPPSQLNLTS-RPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLR

Query:  YIEFQRISGVIIWCCTV-VSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKE
         I    I    IW  T+ +SML +KF+  LV   EST+ILV+ MEFG                       Y+N++ L+LRQRS SITASNSSDGNS  ++
Subjt:  YIEFQRISGVIIWCCTV-VSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKE

Query:  EDGSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        +DG SK T DAQGPPFLTILAG FVFSLVLWI SS+V ++I LVVKLI TK
Subjt:  EDGSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

XP_023547947.1 uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]9.2e-2941.37Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MASIFAAPPS+LNLTSRP+LIH AVLPSS AGIQ+H+NA P PSF                                                       
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                            YRN++GLELRQRS SITASNSSD NS IKEE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        GSSKA+ DAQGPPFLTILAGIFVFSL+LW+ SSA  S+IGLVVKLI TK
Subjt:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

XP_038899532.1 uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]1.3e-3042.97Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MASIFAAP  +LNLTSRP+LIHRA LPSSI  IQFH+NASPFPSFR                                                      
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                            YRN+RGLELRQRS SITASNSSDGNS IKEE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        GSSKA+ DAQGPPFLTILAGIFVFSLVLWIFSS V S + LVVKLI TK
Subjt:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

TrEMBL top hitse value%identityAlignment
A0A0A0K9W1 Uncharacterized protein2.8e-2339.2Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MAS+FAAPPSQLNLTSR + IHRA LPS IA IQFH+NASPFPSFRY                                                     
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                             +N  GLELRQR  SI AS S+DGNS IKEE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKA-TNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
         SSKA ++DAQGPPFLTILAG FV SL+LWIFSSAV S++GLVVKLI  K
Subjt:  GSSKA-TNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

A0A6J1GPL5 uncharacterized protein LOC1114559844.8e-3142.17Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MASIF+APPS+LNLTSRP+LIH AVLPSSIAGIQ+H+NA P PSFR                                                      
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                            YRN++GLELRQRS SITASNSSDGNS IKEE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        GSSKA++DAQGPPFLTILAGIFVFSL+LW+ SSA  S+IGLVVKLI TK
Subjt:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

A0A6J1H506 uncharacterized protein LOC1114606323.8e-2036Show/hide
Query:  MASIFAAPPSQLNLTS-RPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLR
        MAS+FAAPPSQL L+S RP+L H+A LP SI G++FH N  P PSFR                                                     
Subjt:  MASIFAAPPSQLNLTS-RPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLR

Query:  YIEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEE
                                                                             Y+N++GL+LRQRS SITASNSSDGNS  KE+
Subjt:  YIEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEE

Query:  DGSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        +  SK T DAQGPPFLTILAG FVFSLVLWI SS+V ++I L VKLI TK
Subjt:  DGSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

A0A6J1JUC2 uncharacterized protein LOC1114884365.8e-2941.13Show/hide
Query:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY
        MASIFAAPPS+LNLTSRP+LIH AVLPSSIAGIQ+H+NA P PSFR                                                      
Subjt:  MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRY

Query:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED
                                                                            YRN++GLEL  RS SITASNSSDGNS I+EE+
Subjt:  IEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEED

Query:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPT
        GSSKA++DAQGPPFLTILAGIFVFSL+LW+ SSA  S+IGLVVKLI T
Subjt:  GSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPT

A0A6J1KVQ7 uncharacterized protein LOC1114980254.5e-2136.8Show/hide
Query:  MASIFAAPPSQLNLTS-RPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLR
        MAS+FAAPPSQL L+S RP+L H+A LP SI G++FH N  P PSFR                                                     
Subjt:  MASIFAAPPSQLNLTS-RPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLR

Query:  YIEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEE
                                                                             Y+N++GL+LRQRS SITASNSSDGNS  KEE
Subjt:  YIEFQRISGVIIWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEE

Query:  DGSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK
        +  SK T DAQGPPFLTILAG FVFSLVLWI SS+V ++I LVVKLI TK
Subjt:  DGSSKATNDAQGPPFLTILAGIFVFSLVLWIFSSAVASVIGLVVKLIPTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAATTTGATTCACAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACAC
GAACGCCTCTCCATTTCCTTCTTTCAGGTATTTAATCACTCCTCTTCGATCCCTAGCATTCAACTTATATGATCTCTTACAAGATATTGGGATTGTTATATCTTGTAATG
AGACTATTGAGCATCTTAGCATTGAAGTTCTTCTGTTACTTAGTTCTTCCTCTTCAGTTCATTGCATCTGGCTTCGTTACATAGAGTTTCAGAGGATATCTGGAGTTATT
ATATGGTGTTGCACGGTTGTGAGCATGTTAGCATTCAAGTTCGTCTATAACTTAGTTAAGCAAAAGGAATCCACTATGATTCTTGTGCTGAGAATGGAATTTGGAGTGTC
CTTTGTTGATGGAACGAAAATGGTTAAAATCTTGAAACAATTATCCTACTGCCATCTCAAGTTGTACAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCTCTTTCTA
TAACAGCCTCAAATTCCTCAGATGGGAATTCTATCATCAAGGAGGAAGATGGTTCGAGTAAAGCAACTAATGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGA
ATTTTTGTCTTTTCCCTCGTACTCTGGATATTCAGTTCTGCTGTCGCGTCAGTTATAGGTCTAGTCGTCAAGCTGATCCCAACAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCCGAATTTGATTCACAGAGCCGTTCTTCCCTCCTCCATCGCCGGCATTCAATTTCACAC
GAACGCCTCTCCATTTCCTTCTTTCAGGTATTTAATCACTCCTCTTCGATCCCTAGCATTCAACTTATATGATCTCTTACAAGATATTGGGATTGTTATATCTTGTAATG
AGACTATTGAGCATCTTAGCATTGAAGTTCTTCTGTTACTTAGTTCTTCCTCTTCAGTTCATTGCATCTGGCTTCGTTACATAGAGTTTCAGAGGATATCTGGAGTTATT
ATATGGTGTTGCACGGTTGTGAGCATGTTAGCATTCAAGTTCGTCTATAACTTAGTTAAGCAAAAGGAATCCACTATGATTCTTGTGCTGAGAATGGAATTTGGAGTGTC
CTTTGTTGATGGAACGAAAATGGTTAAAATCTTGAAACAATTATCCTACTGCCATCTCAAGTTGTACAGGAACAGCAGAGGATTGGAATTAAGGCAAAGATCTCTTTCTA
TAACAGCCTCAAATTCCTCAGATGGGAATTCTATCATCAAGGAGGAAGATGGTTCGAGTAAAGCAACTAATGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGA
ATTTTTGTCTTTTCCCTCGTACTCTGGATATTCAGTTCTGCTGTCGCGTCAGTTATAGGTCTAGTCGTCAAGCTGATCCCAACAAAGTAG
Protein sequenceShow/hide protein sequence
MASIFAAPPSQLNLTSRPNLIHRAVLPSSIAGIQFHTNASPFPSFRYLITPLRSLAFNLYDLLQDIGIVISCNETIEHLSIEVLLLLSSSSSVHCIWLRYIEFQRISGVI
IWCCTVVSMLAFKFVYNLVKQKESTMILVLRMEFGVSFVDGTKMVKILKQLSYCHLKLYRNSRGLELRQRSLSITASNSSDGNSIIKEEDGSSKATNDAQGPPFLTILAG
IFVFSLVLWIFSSAVASVIGLVVKLIPTK