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Clc09G04275 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G04275
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S acidic ribosomal protein family
Genome locationClcChr09:3413843..3414659
RNA-Seq ExpressionClc09G04275
SyntenyClc09G04275
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8516696.1 hypothetical protein F0562_016798 [Nyssa sinensis]9.9e-0562.5Show/hide
Query:  SKKMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        S+KMKVVA YLL VLGGN   S D++K I+ S+  E +D+RFELLLSQ
Subjt:  SKKMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

KAG6604363.1 hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0458.7Show/hide
Query:  KMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        +MK+VA YLL VLGGN + S+++I  I+ S+ +EV+DER ELLLSQ
Subjt:  KMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

MBA0644904.1 hypothetical protein [Gossypium klotzschianum]5.8e-0564.44Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MKVVA YLL VLGGN  HS D++KVI+ S+ VE +D+R ELLLS+
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

XP_022925971.1 60S acidic ribosomal protein P2-like [Cucurbita moschata]9.9e-0562.22Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MK+VA YLL VLGGN + S+++I  I+ S+ +EVEDER ELLLSQ
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

XP_023543240.1 60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]9.9e-0562.22Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MK+VA YLL VLGGN + S+++I  I+ S+ +EVEDER ELLLSQ
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

TrEMBL top hitse value%identityAlignment
A0A0A0KKF6 Uncharacterized protein8.2e-0564.44Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MK+VA YLL +LGGN + SI +IK I+ S+ VE EDER ELLLSQ
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

A0A5J4ZG48 Pyr_redox_2 domain-containing protein4.8e-0562.5Show/hide
Query:  SKKMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        S+KMKVVA YLL VLGGN   S D++K I+ S+  E +D+RFELLLSQ
Subjt:  SKKMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

A0A6J1CQB9 60S acidic ribosomal protein P2A-like6.3e-0566.67Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MK+VA YLL VLGGN   S+D IK I+ S+ VEVED+R ELLLSQ
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

A0A6J1EDL3 60S acidic ribosomal protein P2-like4.8e-0562.22Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MK+VA YLL VLGGN + S+++I  I+ S+ +EVEDER ELLLSQ
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

A0A7J8U3S5 Uncharacterized protein2.8e-0564.44Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MKVVA YLL VLGGN  HS D++KVI+ S+ VE +D+R ELLLS+
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B3.0e-0446.67Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MKV+A YLL VLGGN   + D++K I++S+  E ++E+ E LL++
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

P46252 60S acidic ribosomal protein P2A3.0e-0453.33Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MK VA YLL VL GN   S D++  I++S+  EV++E+ ELLLSQ
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

Arabidopsis top hitse value%identityAlignment
AT3G44590.1 60S acidic ribosomal protein family5.2e-0451.11Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MKV A +LL VLGGN   S D IK II ++  +V+ E  ELLL +
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ

AT3G44590.2 60S acidic ribosomal protein family5.2e-0451.11Show/hide
Query:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ
        MKV A +LL VLGGN   S D IK II ++  +V+ E  ELLL +
Subjt:  MKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAAAAGATGAAGGTTGTTGCGACTTATTTGTTGGTTGTTTTGGGTGGAAATATTTACCATTCCATTGATGAAATTAAAGTCATTATCGACTCTCTTAGAGTTGA
GGTTGAAGATGAAAGATTCGAGTTGCTTCTTTCCCAATATGTTGAAAATAAAATGCAAATGAGGAAAATTTCACAAGATAAACCTGAAGTGAAGAGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAAAAGATGAAGGTTGTTGCGACTTATTTGTTGGTTGTTTTGGGTGGAAATATTTACCATTCCATTGATGAAATTAAAGTCATTATCGACTCTCTTAGAGTTGA
GGTTGAAGATGAAAGATTCGAGTTGCTTCTTTCCCAATATGTTGAAAATAAAATGCAAATGAGGAAAATTTCACAAGATAAACCTGAAGTGAAGAGTGAATGA
Protein sequenceShow/hide protein sequence
MSKKMKVVATYLLVVLGGNIYHSIDEIKVIIDSLRVEVEDERFELLLSQYVENKMQMRKISQDKPEVKSE