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Clc09G04350 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G04350
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPectin lyase-like superfamily protein
Genome locationClcChr09:3462186..3463519
RNA-Seq ExpressionClc09G04350
SyntenyClc09G04350
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575692.1 Polygalacturonase QRT2, partial [Cucurbita argyrosperma subsp. sororia]4.4e-1462.67Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

KAG7014247.1 hypothetical protein SDJN02_24422, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-1462.67Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

XP_022953263.1 polygalacturonase QRT2-like [Cucurbita moschata]4.4e-1462.67Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

XP_023547692.1 polygalacturonase QRT2-like [Cucurbita pepo subsp. pepo]5.7e-1462.67Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

XP_038899303.1 polygalacturonase QRT2-like [Benincasa hispida]1.3e-1361.33Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYA+NIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

TrEMBL top hitse value%identityAlignment
A0A0A0K6J9 Uncharacterized protein1.8e-1360Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   +  EV   V    K       +++  W    GGKGYA+NIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

A0A5A7URW0 Polygalacturonase QRT22.4e-1360Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYA+NIIFQNIVMDNVTNPIII+QNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

A0A6J1GMX8 polygalacturonase QRT2-like2.1e-1462.67Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

A0A6J1JXJ9 polygalacturonase QRT2-like8.1e-1461.33Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYA+NIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

O81246 Polygalacturonase2.4e-1360Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA
        G   S  EV   V    K    +  +++  W    GGKGYA+NIIFQNIVMDNVTNPIII+QNYCDQKEPCTQQA
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQA

SwissProt top hitse value%identityAlignment
P05117 Polygalacturonase-21.1e-0743.24Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQ
        G  NS   V      + K++ A   +++  W    GG G A NI F N+ M +V  PIIIDQNYCD+ EPC QQ
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQ

P35336 Polygalacturonase3.4e-0944.74Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA
        G  NS   V   V    K+      +++  W    GG G A NI FQN+ M NV NPIIIDQNYCDQ +PC +Q++
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA

Q02096 Polygalacturonase2.6e-0947.3Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQ
        G +NS   V   +     +      L++  W    GG G A+NI FQNIVM NVTNPIIIDQ YCD K+PC +Q
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQ

Q8RY29 Polygalacturonase ADPG23.7e-0865.85Show/hide
Query:  GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA
        GG G A NIIFQNI MDNV NPIIIDQ+YCD+ +  T+++A
Subjt:  GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA

Q9SFB7 Polygalacturonase QRT23.4e-0940.7Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA----NTILFK
        G  NS   V   V  K  ++     +++  W    GG G A+NIIFQ+I+M NVTNPIII+Q+YCD+ E C +Q +    + +L+K
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA----NTILFK

Arabidopsis top hitse value%identityAlignment
AT1G80170.1 Pectin lyase-like superfamily protein1.7e-0840Show/hide
Query:  KNSSNEVLRTVAMKKKVLR-AAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA
        K+ S E +R + +   ++   A  +++  W    GG G    IIF+NI M+NV+NPIIIDQ YCD ++PC  Q +
Subjt:  KNSSNEVLRTVAMKKKVLR-AAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA

AT2G41850.1 polygalacturonase abscission zone A. thaliana2.7e-0965.85Show/hide
Query:  GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA
        GG G A NIIFQNI MDNV NPIIIDQ+YCD+ +  T+++A
Subjt:  GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA

AT2G43890.1 Pectin lyase-like superfamily protein2.5e-0750Show/hide
Query:  GYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA
        G+  N++FQN++M NV NPII+DQNYC   + C +Q +
Subjt:  GYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA

AT3G07970.1 Pectin lyase-like superfamily protein2.4e-1040.7Show/hide
Query:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA----NTILFK
        G  NS   V   V  K  ++     +++  W    GG G A+NIIFQ+I+M NVTNPIII+Q+YCD+ E C +Q +    + +L+K
Subjt:  GVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQAA----NTILFK

AT3G57510.1 Pectin lyase-like superfamily protein1.5e-0766.67Show/hide
Query:  GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQ
        GG G A+NI FQNI M+NV NPIIIDQ+YCD K+ C  Q
Subjt:  GGKGYAENIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCAATGGCCCATAATGGTTGGGATGGACCAGCCCAAGGAATTTTGGCTGTTCACCCCCAAGGACCATTTATTCCTTTTATCATAGTTCCTAATGAAGATGAAGA
AGAAGGTGTTAAGAGCAGTAGCAATGAAGAAGAAGGTGTTAAGAACAGTAGCAATGAAGTGTTAAGAACAGTAGCGATGAAGAAGAAGGTGTTAAGAGCAGCGATGAAAC
TGAAGCTCATGAAATGGTTTGGTCTATATGGAGGAAAAGGGTATGCAGAAAACATAATATTCCAGAACATTGTGATGGACAATGTGACCAACCCAATTATCATAGATCAA
AACTACTGTGACCAGAAAGAACCATGCACACAACAGGCAGCTAACACCATACTCTTCAAAGCCCATGTCCCAGAAAGCATTTCACACAAATTTTCTGTAATGGGCTCAAT
GGCCCATATGGTTGGGATGGACCGGCCTAAGGAATTTTGGCTTTCACGACAACAAAACGACAACAAAACGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCAATGGCCCATAATGGTTGGGATGGACCAGCCCAAGGAATTTTGGCTGTTCACCCCCAAGGACCATTTATTCCTTTTATCATAGTTCCTAATGAAGATGAAGA
AGAAGGTGTTAAGAGCAGTAGCAATGAAGAAGAAGGTGTTAAGAACAGTAGCAATGAAGTGTTAAGAACAGTAGCGATGAAGAAGAAGGTGTTAAGAGCAGCGATGAAAC
TGAAGCTCATGAAATGGTTTGGTCTATATGGAGGAAAAGGGTATGCAGAAAACATAATATTCCAGAACATTGTGATGGACAATGTGACCAACCCAATTATCATAGATCAA
AACTACTGTGACCAGAAAGAACCATGCACACAACAGGCAGCTAACACCATACTCTTCAAAGCCCATGTCCCAGAAAGCATTTCACACAAATTTTCTGTAATGGGCTCAAT
GGCCCATATGGTTGGGATGGACCGGCCTAAGGAATTTTGGCTTTCACGACAACAAAACGACAACAAAACGTGTTAA
Protein sequenceShow/hide protein sequence
MGSMAHNGWDGPAQGILAVHPQGPFIPFIIVPNEDEEEGVKSSSNEEEGVKNSSNEVLRTVAMKKKVLRAAMKLKLMKWFGLYGGKGYAENIIFQNIVMDNVTNPIIIDQ
NYCDQKEPCTQQAANTILFKAHVPESISHKFSVMGSMAHMVGMDRPKEFWLSRQQNDNKTC