; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G04380 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G04380
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNuclear transcription factor Y subunit
Genome locationClcChr09:3486911..3496508
RNA-Seq ExpressionClc09G04380
SyntenyClc09G04380
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsIPR001289 - Nuclear transcription factor Y subunit A
IPR007493 - Protein of unknown function DUF538
IPR018362 - CCAAT-binding factor, conserved site
IPR036758 - At5g01610-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575690.1 Nuclear transcription factor Y subunit A-9, partial [Cucurbita argyrosperma subsp. sororia]6.5e-13088.43Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE A KT+SAEYLN TV+SG TQSQANDENIGKEVQH+KYIPF+ SPPVGE LDLNSQMELVGHSIVLTSYPFSDAQYCQML S GPQST PHIYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNT+REE INSGANH TKPV E
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        AGSKYMV D+NGIKDTL+EE +EFMTQN+QIT AFFNGK N HG+STY SQLADVEGGHL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

KAG7014245.1 Nuclear transcription factor Y subunit A-9 [Cucurbita argyrosperma subsp. argyrosperma]6.5e-13088.43Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE A KT+SAEYLN TV+SG TQSQANDENIGKEVQH+KYIPF+ SPPVGE LDLNSQMELVGHSIVLTSYPFSDAQYCQML S GPQST PHIYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNT+REE INSGANH TKPV E
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        AGSKYMV D+NGIKDTL+EE +EFMTQN+QIT AFFNGK N HG+STY SQLADVEGGHL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

XP_004135933.1 nuclear transcription factor Y subunit A-4 isoform X1 [Cucumis sativus]5.7e-13491.04Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE AAKTSSAEYLNVTV SGATQ QANDENIGKEVQH+KYIPF+TSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQML SYGPQ+TLP IYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNV+SNTNREEDI+S ANH TKPVSE
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        A SKYMVT++ GIK+TLDE+ REFMTQNMQITHAFFNGKSNVHGLSTY+SQL DVEGGHL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

XP_008461297.1 PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis melo]3.0e-13591.42Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE AAKTSSAEYLNVTV SGATQ QANDENIGKEVQH+KYIPF+TSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQML SYGPQ+TLP IYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNV+SNTNREEDINSGANH TKPVSE
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
         GSKYMVT + GIK+TLDE+ RE MTQNMQITHAFFNGKSNVHGLSTYNSQL DVEGGHL+ PHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

XP_038899773.1 nuclear transcription factor Y subunit A-1-like [Benincasa hispida]8.2e-13391.79Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        +IGE AAKTSSAEYLNVTVTSGATQSQANDENIGKEVQH+KYIPF+TSPPVGEHLD NSQMELVGHSIVLTSYPFSDAQY QML SYGPQSTLPHIYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVI+SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINS ANHLTKPVS 
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        A  KY V D+N IKDTL+ EGRE M  NMQITHAFFNGKSNVHGLSTYNSQLADVEGGHL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

TrEMBL top hitse value%identityAlignment
A0A0A0K612 Nuclear transcription factor Y subunit2.8e-13491.04Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE AAKTSSAEYLNVTV SGATQ QANDENIGKEVQH+KYIPF+TSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQML SYGPQ+TLP IYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNV+SNTNREEDI+S ANH TKPVSE
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        A SKYMVT++ GIK+TLDE+ REFMTQNMQITHAFFNGKSNVHGLSTY+SQL DVEGGHL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

A0A1S3CED9 Nuclear transcription factor Y subunit1.5e-13591.42Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE AAKTSSAEYLNVTV SGATQ QANDENIGKEVQH+KYIPF+TSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQML SYGPQ+TLP IYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNV+SNTNREEDINSGANH TKPVSE
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
         GSKYMVT + GIK+TLDE+ RE MTQNMQITHAFFNGKSNVHGLSTYNSQL DVEGGHL+ PHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

A0A5D3CGW1 Nuclear transcription factor Y subunit1.5e-13591.42Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE AAKTSSAEYLNVTV SGATQ QANDENIGKEVQH+KYIPF+TSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQML SYGPQ+TLP IYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNV+SNTNREEDINSGANH TKPVSE
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
         GSKYMVT + GIK+TLDE+ RE MTQNMQITHAFFNGKSNVHGLSTYNSQL DVEGGHL+ PHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

A0A6J1GNB7 Nuclear transcription factor Y subunit2.0e-12987.69Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE A KT+SA+YLN TV+SG TQSQ NDENIGKEVQH+KYIPF+ SPPVGE LDLNSQMELVGHSIVLTSYPFSDAQYCQML S GPQST PHIYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNT+REE INSGANH TKPVSE
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        AGSKYM  D+NGIKDTL+EE +EFMTQN+QIT AFFNGK N HG+STY SQLADVEGGHL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

A0A6J1JW53 Nuclear transcription factor Y subunit3.8e-12886.94Show/hide
Query:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH
        + GE A KT+S +YLN TV+SG TQSQANDENIGKEVQH+KYIPF+TSPPVGE LDLNSQMELVGHSIVLTSYPFSDAQYCQML S GPQST PHIYGLH
Subjt:  LIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIYGLH

Query:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE
        HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNT+RE+ IN GANH TKPV+E
Subjt:  HARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSE

Query:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ
        AGSKYMV D+NGIKDTL+EE +EFMTQN+QIT AFFNGK N HG+STY SQLADVEG HL+QPHESMQ
Subjt:  AGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQ

SwissProt top hitse value%identityAlignment
Q84JP1 Nuclear transcription factor Y subunit A-72.4e-2650Show/hide
Query:  HSIVLTSYPFSDAQYCQMLASYGPQSTLPH--IYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARG
        +S+    YP+ D  Y  + A      T  H  + G+    +PLP +  EEPV+VNAKQYHGILRRRQSRA+ E + KVIKSRKPYLHESRHLHA+RR RG
Subjt:  HSIVLTSYPFSDAQYCQMLASYGPQSTLPH--IYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARG

Query:  SGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGS
         GGRFLN KK +    +++ EE  N  A       S   S
Subjt:  SGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGS

Q8VY64 Nuclear transcription factor Y subunit A-41.8e-2643.85Show/hide
Query:  SQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNS-QMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIY--------GLHHARMPLPLEMEEEPVY
        S  N+ +  KE    +  P   S    E +D NS   E + H +    YP+ D  Y  + A    Q+ LPH Y        G+    +PL  +  EEPV+
Subjt:  SQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNS-QMELVGHSIVLTSYPFSDAQYCQMLASYGPQSTLPHIY--------GLHHARMPLPLEMEEEPVY

Query:  VNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGS
        VNAKQYHGILRRRQSRAK E   + IK++KPY+HESRHLHA+RR RG GGRFLN KK N    +   EE+  S  N      SEA S
Subjt:  VNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGS

Q945M9 Nuclear transcription factor Y subunit A-91.3e-3244.86Show/hide
Query:  AKTSSAEYLNVTVTSGATQSQAN-DENIGKEVQHVKYIPFTTSP-PVGEHLDLNSQM------------ELVGHSI-VLTSYPFSDAQYCQMLASYG--P
        A   S++ + + + S  ++S +N D  + KE Q       TTSP   G++ D N +             +LVGH++   +S P+ D  Y  ++ +YG  P
Subjt:  AKTSSAEYLNVTVTSGATQSQAN-DENIGKEVQHVKYIPFTTSP-PVGEHLDLNSQM------------ELVGHSI-VLTSYPFSDAQYCQMLASYG--P

Query:  QSTLPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINS
           +P+  G+ H+RMPLP EM +EPV+VNAKQY  ILRRRQ+RAKAELEKK+IKSRKPYLHESRH HAMRR RG+GGRF   KK N   S    EE  N 
Subjt:  QSTLPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINS

Query:  GANHLTKPVSEAGS
           H+T+  S + S
Subjt:  GANHLTKPVSEAGS

Q9LNP6 Nuclear transcription factor Y subunit A-83.8e-2449.23Show/hide
Query:  SYPFSDAQYCQML-ASYGPQSTLPHIYGLHHARMPLPLEM-EEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFL
        S+ ++D  +  ++ A+Y PQ+T   I+     R+PLP ++ E EPV+VNAKQ+H I+RRRQ RAK E + K+IK+RKPYLHESRH+HA++R RGSGGRFL
Subjt:  SYPFSDAQYCQML-ASYGPQSTLPHIYGLHHARMPLPLEM-EEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFL

Query:  NTKKPNNVISNTNREEDINSGANHLTKPVS
        NTKK   +  +T+ ++D+     H T  +S
Subjt:  NTKKPNNVISNTNREEDINSGANHLTKPVS

Q9LXV5 Nuclear transcription factor Y subunit A-16.7e-2949.38Show/hide
Query:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR
        ELVGH I     P+ D  Y  ++ +YG Q     P++ G+   R  LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMR
Subjt:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR

Query:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG
        RAR SGGRF   KK     S     ED            + +GS+ + TD N   +TL+  G
Subjt:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG

Arabidopsis top hitse value%identityAlignment
AT3G20910.1 nuclear factor Y, subunit A99.3e-3444.86Show/hide
Query:  AKTSSAEYLNVTVTSGATQSQAN-DENIGKEVQHVKYIPFTTSP-PVGEHLDLNSQM------------ELVGHSI-VLTSYPFSDAQYCQMLASYG--P
        A   S++ + + + S  ++S +N D  + KE Q       TTSP   G++ D N +             +LVGH++   +S P+ D  Y  ++ +YG  P
Subjt:  AKTSSAEYLNVTVTSGATQSQAN-DENIGKEVQHVKYIPFTTSP-PVGEHLDLNSQM------------ELVGHSI-VLTSYPFSDAQYCQMLASYG--P

Query:  QSTLPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINS
           +P+  G+ H+RMPLP EM +EPV+VNAKQY  ILRRRQ+RAKAELEKK+IKSRKPYLHESRH HAMRR RG+GGRF   KK N   S    EE  N 
Subjt:  QSTLPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISNTNREEDINS

Query:  GANHLTKPVSEAGS
           H+T+  S + S
Subjt:  GANHLTKPVSEAGS

AT5G12840.1 nuclear factor Y, subunit A14.8e-3049.38Show/hide
Query:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR
        ELVGH I     P+ D  Y  ++ +YG Q     P++ G+   R  LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMR
Subjt:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR

Query:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG
        RAR SGGRF   KK     S     ED            + +GS+ + TD N   +TL+  G
Subjt:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG

AT5G12840.2 nuclear factor Y, subunit A14.8e-3049.38Show/hide
Query:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR
        ELVGH I     P+ D  Y  ++ +YG Q     P++ G+   R  LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMR
Subjt:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR

Query:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG
        RAR SGGRF   KK     S     ED            + +GS+ + TD N   +TL+  G
Subjt:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG

AT5G12840.3 nuclear factor Y, subunit A14.8e-3049.38Show/hide
Query:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR
        ELVGH I     P+ D  Y  ++ +YG Q     P++ G+   R  LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMR
Subjt:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR

Query:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG
        RAR SGGRF   KK     S     ED            + +GS+ + TD N   +TL+  G
Subjt:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG

AT5G12840.4 nuclear factor Y, subunit A14.8e-3049.38Show/hide
Query:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR
        ELVGH I     P+ D  Y  ++ +YG Q     P++ G+   R  LPL+M +EPVYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMR
Subjt:  ELVGHSIVLTSYPFSDAQYCQMLASYGPQST--LPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR

Query:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG
        RAR SGGRF   KK     S     ED            + +GS+ + TD N   +TL+  G
Subjt:  RARGSGGRFLNTKKPNNVISNTNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATCCAAAAGAGGGTGGGATAGTGAAAAGGGGGCACGAAGAAGGGCTTGAACTGGCCGTAGCCCTTCTGAAGGAGTTCGAGCTACCAGAAGGGCTTCTCCCTCT
AGCTGACGTGGTGGAAGTTGGGTATGTGAAGGAGACTGGCTACGTTTGGATTGTGCAGAGGAAAAAAGTGGAGCACGAGTTCAAAATGGTGAGTAAGTTAGTGAGTTATG
ACTCGGAGATCACTGGGTTCATTTTGAATAAGAGGATTAAGAAGCTTAAGGGCGTTAAGGCTAAGGAGTTTCTGCTTTGGCCACCCGTTAATGATATCTACCTCGATCAT
CCCTCCACAGGAAAGATTCACTTCAAGAGCCTCGCTGGCGTCACCAAAACTTTTCCGGTCGAGGCCTTTGCTGCAGGCCACTCCCTAGATTCGACTGTCTGTTTCATAAT
CACACGACAGTTGATAGGTGAAAAAGCTGCTAAAACATCTTCTGCAGAATACCTGAACGTTACTGTTACCAGTGGAGCAACGCAGTCACAAGCAAATGATGAAAATATTG
GGAAAGAAGTCCAGCATGTCAAGTACATTCCGTTTACTACATCCCCACCCGTGGGCGAACACCTGGATCTAAATTCCCAAATGGAACTTGTAGGCCACTCAATTGTTTTG
ACATCATATCCTTTTTCTGATGCACAATATTGTCAAATGCTGGCTTCTTATGGACCACAATCAACGTTACCTCATATTTATGGACTTCACCATGCTAGGATGCCTTTACC
CCTTGAAATGGAAGAAGAGCCCGTTTATGTAAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGGCAGTCGCGGGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAA
GTAGAAAGCCATATCTTCATGAATCCAGACACCTCCATGCTATGAGACGAGCTAGAGGCAGTGGAGGACGTTTCCTCAATACCAAAAAACCCAACAATGTTATTTCCAAT
ACAAATAGGGAGGAAGACATCAATTCTGGTGCAAACCATTTAACAAAACCTGTCAGCGAGGCTGGATCGAAGTACATGGTGACTGACAAAAATGGAATCAAGGATACACT
CGATGAGGAGGGCAGAGAGTTCATGACTCAAAATATGCAGATAACACACGCTTTCTTCAACGGAAAATCAAATGTCCATGGTTTATCCACATACAATTCACAACTTGCTG
ATGTCGAGGGAGGGCATCTCAATCAGCCGCATGAAAGCATGCAACACTGTTTAACCAGTTTCAGTGCAGATAACTTGAATATTCAGCAATTCATTCTTGGCTTTAGTTGG
TACTTCAGAGGTGAGAAGGAAGAAGATGAAGAAATGCAGTGCACCAAAAAAAGTGGTAAAGCTGGAACAAGAGGATGGGAAATCTTTTGTCAAAGTTTATCAGAAGTCCA
ACTGAATGCAAATGACTTTGGCACTAACCTCCGTGACAAAGAAGGCATGAAACCCATATGGAACTCTGTGTGGCAATTCGACAACTGCAACAGGCTCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATCCAAAAGAGGGTGGGATAGTGAAAAGGGGGCACGAAGAAGGGCTTGAACTGGCCGTAGCCCTTCTGAAGGAGTTCGAGCTACCAGAAGGGCTTCTCCCTCT
AGCTGACGTGGTGGAAGTTGGGTATGTGAAGGAGACTGGCTACGTTTGGATTGTGCAGAGGAAAAAAGTGGAGCACGAGTTCAAAATGGTGAGTAAGTTAGTGAGTTATG
ACTCGGAGATCACTGGGTTCATTTTGAATAAGAGGATTAAGAAGCTTAAGGGCGTTAAGGCTAAGGAGTTTCTGCTTTGGCCACCCGTTAATGATATCTACCTCGATCAT
CCCTCCACAGGAAAGATTCACTTCAAGAGCCTCGCTGGCGTCACCAAAACTTTTCCGGTCGAGGCCTTTGCTGCAGGCCACTCCCTAGATTCGACTGTCTGTTTCATAAT
CACACGACAGTTGATAGGTGAAAAAGCTGCTAAAACATCTTCTGCAGAATACCTGAACGTTACTGTTACCAGTGGAGCAACGCAGTCACAAGCAAATGATGAAAATATTG
GGAAAGAAGTCCAGCATGTCAAGTACATTCCGTTTACTACATCCCCACCCGTGGGCGAACACCTGGATCTAAATTCCCAAATGGAACTTGTAGGCCACTCAATTGTTTTG
ACATCATATCCTTTTTCTGATGCACAATATTGTCAAATGCTGGCTTCTTATGGACCACAATCAACGTTACCTCATATTTATGGACTTCACCATGCTAGGATGCCTTTACC
CCTTGAAATGGAAGAAGAGCCCGTTTATGTAAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGGCAGTCGCGGGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAA
GTAGAAAGCCATATCTTCATGAATCCAGACACCTCCATGCTATGAGACGAGCTAGAGGCAGTGGAGGACGTTTCCTCAATACCAAAAAACCCAACAATGTTATTTCCAAT
ACAAATAGGGAGGAAGACATCAATTCTGGTGCAAACCATTTAACAAAACCTGTCAGCGAGGCTGGATCGAAGTACATGGTGACTGACAAAAATGGAATCAAGGATACACT
CGATGAGGAGGGCAGAGAGTTCATGACTCAAAATATGCAGATAACACACGCTTTCTTCAACGGAAAATCAAATGTCCATGGTTTATCCACATACAATTCACAACTTGCTG
ATGTCGAGGGAGGGCATCTCAATCAGCCGCATGAAAGCATGCAACACTGTTTAACCAGTTTCAGTGCAGATAACTTGAATATTCAGCAATTCATTCTTGGCTTTAGTTGG
TACTTCAGAGGTGAGAAGGAAGAAGATGAAGAAATGCAGTGCACCAAAAAAAGTGGTAAAGCTGGAACAAGAGGATGGGAAATCTTTTGTCAAAGTTTATCAGAAGTCCA
ACTGAATGCAAATGACTTTGGCACTAACCTCCGTGACAAAGAAGGCATGAAACCCATATGGAACTCTGTGTGGCAATTCGACAACTGCAACAGGCTCAGATGACATAGTT
TTTGCATCCACGACATTCACTGCAGATTTTCTGCAGGAAACAATGAAAATTATTCTCCTCTTTAGCAAAATAAACTAAATTTGATTCAGCACAAGTATTTTGTAAAACTG
CCTACTTGCGTTCTTATGCAAATACCAAAAGTTAGCTAAGCAATTAGGATGTCTAAGTTCATGAATAGCAAAAGTTATAAGAAAAATTTTAATTGAGA
Protein sequenceShow/hide protein sequence
MGDPKEGGIVKRGHEEGLELAVALLKEFELPEGLLPLADVVEVGYVKETGYVWIVQRKKVEHEFKMVSKLVSYDSEITGFILNKRIKKLKGVKAKEFLLWPPVNDIYLDH
PSTGKIHFKSLAGVTKTFPVEAFAAGHSLDSTVCFIITRQLIGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVL
TSYPFSDAQYCQMLASYGPQSTLPHIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVISN
TNREEDINSGANHLTKPVSEAGSKYMVTDKNGIKDTLDEEGREFMTQNMQITHAFFNGKSNVHGLSTYNSQLADVEGGHLNQPHESMQHCLTSFSADNLNIQQFILGFSW
YFRGEKEEDEEMQCTKKSGKAGTRGWEIFCQSLSEVQLNANDFGTNLRDKEGMKPIWNSVWQFDNCNRLR