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Clc09G04510 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G04510
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionarabinogalactan peptide 23-like
Genome locationClcChr09:3603786..3607150
RNA-Seq ExpressionClc09G04510
SyntenyClc09G04510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-1484.13Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAAT++A VA+DESLSPAAAPGPSSAASAALP+LGSLVGASLVSFVA++ N
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
XP_022960230.1 arabinogalactan peptide 23-like [Cucurbita moschata]1.4e-1485.71Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAATL+A VA+DESLSPAAAPGPSSAASAALP+LGSLVGASLVSFVA++ N
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.1e-1485.71Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAAT++A VA+DESLSPAAAPGPSSAASAALP+LGSLVGASLVSFVAY+ N
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]1.1e-1485.71Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMKN ACAALFAAA ++A VA+DESLSPAAAPGPSSAASAALP+LGSL+GASLVSFVAY LN
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]2.2e-1588.89Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAA +S+AVAADESLSPAAAPGPSSAASAALP+LGSLVGASLV+FVAYFLN
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like1.7e-1079.69Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFV-AYFLN
        MEMK  ACAALFAAA +SAAVAADES+SPAAAPGPSSAASAALP    ++GAS+VSFV AYFLN
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFV-AYFLN
A0A6J1F3F5 arabinogalactan peptide 23-like7.5e-1482.54Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAAT++A VA+DESLSPAAAPGPSSAASA LP+LGSLVGASLVS VAY+ N
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
A0A6J1H8I1 arabinogalactan peptide 23-like6.8e-1585.71Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAATL+A VA+DESLSPAAAPGPSSAASAALP+LGSLVGASLVSFVA++ N
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
A0A6J1IYE9 arabinogalactan peptide 23-like2.8e-1380.95Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMKN AC ALF AA ++A VA+DES SPAAAPGPSSAASAALP+LGSL+GASLVSFVAY LN
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
A0A6J1KX42 arabinogalactan peptide 23-like5.2e-1585.71Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  ACAALFAAAT++A VA+DESLSPAAAPGPSSAASAALP+LGSLVGASLVSFVAY+ N
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 238.2e-1065.08Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  AC  LFAAA+++A +AA+E  +P  APGP+SAASAALP+LGSLVGASLVS  +Y+L+
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)7.9e-0859.38Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGP-SSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  AC  +FAAA+++A +AA+     A APGP +S AS A+P+LGSLVGASLVS  AY+LN
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGP-SSAASAALPSLGSLVGASLVSFVAYFLN
AT3G57690.1 arabinogalactan protein 235.8e-1165.08Show/hide
Query:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN
        MEMK  AC  LFAAA+++A +AA+E  +P  APGP+SAASAALP+LGSLVGASLVS  +Y+L+
Subjt:  MEMKNFACAALFAAATLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCTTGGAAGTGCCGGAAATCGCCATTGAAAGTGAAAGAAATTACTTAAGAGAAGAAAAGGAATGGTGGCCGGAAGGCGTGTGGACCCCACCGGGACTAGGCGT
CCAATTGCGTGGTGAAAAGTCGCGTCTGTTTGTGGGCTGTCGTCTGTTGAAAGGAAAAAAGAAAGGAGGAGCTTGGCGCAGCAATCCAACAATCAGAGGCTTCTTCGGTT
CGATCGCTCCATCTCAATCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCAATCTCATCCGCCATGGAAATGAAGAACTTCGCTTGCGCCGCCCTCTTCGCCGCCGCC
ACCCTCAGCGCCGCCGTTGCTGCCGATGAGTCTCTCTCTCCTGCCGCTGCGCCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCTCCCTCGGATCCCTCGTCGGTGC
CTCACTTGTTTCCTTCGTTGCCTACTTCTTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCTTGGAAGTGCCGGAAATCGCCATTGAAAGTGAAAGAAATTACTTAAGAGAAGAAAAGGAATGGTGGCCGGAAGGCGTGTGGACCCCACCGGGACTAGGCGT
CCAATTGCGTGGTGAAAAGTCGCGTCTGTTTGTGGGCTGTCGTCTGTTGAAAGGAAAAAAGAAAGGAGGAGCTTGGCGCAGCAATCCAACAATCAGAGGCTTCTTCGGTT
CGATCGCTCCATCTCAATCGGAAGTGAGTTTTCTGCCGAAGAAAGCCAATTCAATCTCATCCGCCATGGAAATGAAGAACTTCGCTTGCGCCGCCCTCTTCGCCGCCGCC
ACCCTCAGCGCCGCCGTTGCTGCCGATGAGTCTCTCTCTCCTGCCGCTGCGCCGGGGCCGAGCAGCGCCGCCTCCGCCGCTCTCCCCTCCCTCGGATCCCTCGTCGGTGC
CTCACTTGTTTCCTTCGTTGCCTACTTCTTGAACTGAAGCCCCGCCCCAGAGAGGGAGATTCTAATTGAAATTTTATGTTTACTTTTTTCATTTTTCTTTATGTGTTTGG
TTTTTACGAATGTCGATGGATGATGTGATGTGACGTCATATATAAATGAAAATTAAGAA
Protein sequenceShow/hide protein sequence
MEILEVPEIAIESERNYLREEKEWWPEGVWTPPGLGVQLRGEKSRLFVGCRLLKGKKKGGAWRSNPTIRGFFGSIAPSQSEVSFLPKKANSISSAMEMKNFACAALFAAA
TLSAAVAADESLSPAAAPGPSSAASAALPSLGSLVGASLVSFVAYFLN