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Clc09G04810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G04810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L44
Genome locationClcChr09:3803252..3804643
RNA-Seq ExpressionClc09G04810
SyntenyClc09G04810
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0008643 - carbohydrate transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3463638.1 60S ribosomal protein L44-like [Gossypium australe]2.1e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

MBA0750941.1 hypothetical protein [Gossypium gossypioides]2.1e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

MBA0842590.1 hypothetical protein [Gossypium armourianum]2.1e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

TYI87946.1 hypothetical protein E1A91_D04G172500v1, partial [Gossypium mustelinum]2.1e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

XP_012460311.1 PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]2.1e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

TrEMBL top hitse value%identityAlignment
A0A0D2V4Y2 Uncharacterized protein1.0e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A5B6V3B1 60S ribosomal protein L44-like1.0e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A5D2QY53 Uncharacterized protein (Fragment)1.0e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A7J9CRB6 Uncharacterized protein1.0e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A7J9K7Z2 Uncharacterized protein1.0e-5396.33Show/hide
Query:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
        S + +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD
Subjt:  SMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a2.4e-5292.38Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGK
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

O59870 60S ribosomal protein L441.3e-4276.92Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK K
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

P0CQ50 60S ribosomal protein L442.3e-4276.92Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

P0CQ51 60S ribosomal protein L442.3e-4276.92Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

Q96499 60S ribosomal protein L446.2e-5699.05Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein1.7e-5392.38Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGK
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein1.7e-5392.38Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK
        +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGK
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein4.6e-4691.4Show/hide
Query:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI
        +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Subjt:  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATCTTCCTTCCATTGTTCTTTGCTGTTTGTCTGGATTTTCTTCCTGTTAATGCTTCTATGCTGTGTTTGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAA
GAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGAT
ATGGAGGACAGACCAAGCCTGTCTTTCATAAGAAGGCCAAAACTACAAAAAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCATCCCATTAAG
AGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAATCTTCCTTCCATTGTTCTTTGCTGTTTGTCTGGATTTTCTTCCTGTTAATGCTTCTATGCTGTGTTTGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAA
GAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCCAATACAAAAAGGGTAAGGATAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGAT
ATGGAGGACAGACCAAGCCTGTCTTTCATAAGAAGGCCAAAACTACAAAAAAGATTGTGCTAAGGTTGCAATGCCAGGGTTGCAAGCACGTCTCACAGCATCCCATTAAG
AGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGGATTAACATTGTCCTTCACTATATATTGCTGTTTAGGGAGTCAGAAT
TGTGGGGTTCTTCTGCCCTTTGCTTTTTGTTTGGTGTTTCTGATATTTGGGAACATTTTTACCTGTTGAATTTTGTTTAATGTATCAGTTTATAATGGAACAACTAGCTT
ATCCTCTACCTAATTTCTGTTTATCACTTTGTTTGATATCCACTCTTCATTCTTCGCTGATATGATGCCGAATTGTTTTTTACTTGTTACCA
Protein sequenceShow/hide protein sequence
MVIFLPLFFAVCLDFLPVNASMLCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIK
RCKHFEIGGDKKGKGTSLF