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Clc09G04845 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G04845
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr09:3847349..3847651
RNA-Seq ExpressionClc09G04845
SyntenyClc09G04845
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018821301.1 uncharacterized protein LOC108991470 isoform X1 [Juglans regia]3.4e-0630.21Show/hide
Query:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        +DL + WR+++L+KEE++  I+ +++    ++++ + CLI K+ + R I   II  T A  W+ +     + +G NLF++ F+T++DK+ + +  P
Subjt:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.6e-0836.46Show/hide
Query:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLE-FNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        +L E+W+  +LT EE+ + +D DS       + +E  LI KLLS R I   ++KNT   AW+ + + F+V+ +G N+FL  F+   D+  ++R+GP
Subjt:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLE-FNVEGLGRNLFLVKFDTKKDKEMVMRLGP

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]8.0e-0833.33Show/hide
Query:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        ++L  DW+K +LT EE+++ +D D     +  + + Y L+ KLL+ R I   ++      AW+   +  VE +G+NLFL  F  + D   VM+ GP
Subjt:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.6e-0836.46Show/hide
Query:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWR-SNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        DL E+W+  +LT EE +  ID D+        ++E  L+ KL   R I   ++KNT   AW+  N  F V+ LG NLFL  F    D+  + + GP
Subjt:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWR-SNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

XP_042941294.1 uncharacterized protein LOC122275977 [Carya illinoinensis]2.0e-0638.04Show/hide
Query:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVM
        DDL + W KL+LT+EEN V ID ++     +  + +  L+ KL+S R++   +I++T  N WR    F    +  NLF+V FD +KDK+ V+
Subjt:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVM

TrEMBL top hitse value%identityAlignment
A0A2I4EPI2 uncharacterized protein LOC108991470 isoform X11.6e-0630.21Show/hide
Query:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        +DL + WR+++L+KEE++  I+ +++    ++++ + CLI K+ + R I   II  T A  W+ +     + +G NLF++ F+T++DK+ + +  P
Subjt:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

A0A2I4EPP4 uncharacterized protein LOC108991470 isoform X21.6e-0630.21Show/hide
Query:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        +DL + WR+++L+KEE++  I+ +++    ++++ + CLI K+ + R I   II  T A  W+ +     + +G NLF++ F+T++DK+ + +  P
Subjt:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

A0A6J1BSZ1 uncharacterized protein LOC1110054817.8e-0936.46Show/hide
Query:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLE-FNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        +L E+W+  +LT EE+ + +D DS       + +E  LI KLLS R I   ++KNT   AW+ + + F+V+ +G N+FL  F+   D+  ++R+GP
Subjt:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLE-FNVEGLGRNLFLVKFDTKKDKEMVMRLGP

A0A6J1DU55 uncharacterized protein LOC1110231353.9e-0833.33Show/hide
Query:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        ++L  DW+K +LT EE+++ +D D     +  + + Y L+ KLL+ R I   ++      AW+   +  VE +G+NLFL  F  + D   VM+ GP
Subjt:  DDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

A0A6J1DX30 uncharacterized protein LOC1110248741.7e-0836.46Show/hide
Query:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWR-SNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP
        DL E+W+  +LT EE +  ID D+        ++E  L+ KL   R I   ++KNT   AW+  N  F V+ LG NLFL  F    D+  + + GP
Subjt:  DLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWR-SNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAACCTGACGATCTTTCGGAAGATTGGAGGAAACTTCGTTTAACTAAAGAAGAAAATGATGTTCGAATTGATTATGACTCCCAAATGGACAACATAATTAGCAG
GCAGATGGAATATTGTTTAATCAACAAGTTGCTATCCTCACGAAGAATTGTTCTTGGAATCATTAAAAATACGTTCGCAAATGCTTGGAGGTCGAACCTAGAATTCAATG
TTGAAGGTTTAGGGAGGAATCTATTTCTGGTCAAGTTTGACACCAAAAAAGATAAAGAAATGGTCATGCGCCTTGGTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAACCTGACGATCTTTCGGAAGATTGGAGGAAACTTCGTTTAACTAAAGAAGAAAATGATGTTCGAATTGATTATGACTCCCAAATGGACAACATAATTAGCAG
GCAGATGGAATATTGTTTAATCAACAAGTTGCTATCCTCACGAAGAATTGTTCTTGGAATCATTAAAAATACGTTCGCAAATGCTTGGAGGTCGAACCTAGAATTCAATG
TTGAAGGTTTAGGGAGGAATCTATTTCTGGTCAAGTTTGACACCAAAAAAGATAAAGAAATGGTCATGCGCCTTGGTCCTTAG
Protein sequenceShow/hide protein sequence
MAEPDDLSEDWRKLRLTKEENDVRIDYDSQMDNIISRQMEYCLINKLLSSRRIVLGIIKNTFANAWRSNLEFNVEGLGRNLFLVKFDTKKDKEMVMRLGP