CuGenDBv2

Gene ID	Clc09G05170
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	ClcChr09:4083887..4090508
RNA-Seq Expression	Clc09G05170
Synteny	Clc09G05170
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR005576 - RNA polymerase Rpb7-like , N-terminal IPR013238 - RNA polymerase III, subunit Rpc25 IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-100

68.33

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS
        ETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD + E EAEEDS
Subjt:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

1.1e-99

68.2

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS
        ETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EAEAEEDS
Subjt:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

2.5e-99

67.72

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLPS SEF PDP N GK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEEEAEAEEDS
        ETDEI+FRIHSI+YP IPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD     E EAEAEEDS
Subjt:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEEEAEAEEDS

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

1.6e-101

68.68

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS
        ETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD + +AEAEEDS
Subjt:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

XP_038897233.1 DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Benincasa hispida]

8.3e-103

69.53

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPP+LLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+VGEVIIGKVKES+  GLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VPV LLPS S+F PD NNGGKLRWVW+Y+ VPCDIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEED
        ETDEIRF+IHSI+YPAIPVEQPKERDSKF MEE+P+ENINVKAFAPM++TATIDHDGLGP+SWW+G GDVE+E EAE++
Subjt:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEED

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEN6 DNA-directed RNA polymerase III subunit RPC8 isoform X1

1.9e-97

66.79

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VPV L+PS SEFTPD NNGG+ RWVW Y  VP DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS
        E+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E EEDS
Subjt:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

1.9e-97

66.79

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPSLL+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEVIIGKV+ES+ENGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VPV L+PS SEFTPD NNGG+ RWVW Y  VP DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS
        E+DEI+F+IHSIEYPAI VEQPKE +SKFPMEEKPKE+INVK FAPM++TA++D DGLGP+SWWDGSG+ E E E EEDS
Subjt:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

1.1e-97

68.31

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLP+ SEF PD  NGGK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEE-KPKENI-NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAE--AEEDS
        ETDEI+FRIH+IEYPAIPVEQPKE + KF  EE +PKE+  NVKAFAPMIVT TID+DGLGP+SWWDGSGDV+ EAE  AEEDS
Subjt:  ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEE-KPKENI-NVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAE--AEEDS

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

5.4e-100

68.2

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLPS SEF PDP NGGK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS
        ETDEI+FRIHSI+YPAIPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSG  D + EAEAEEDS
Subjt:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSG--DVEEEAEAEEDS

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

1.2e-99

67.72

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLSRIEHTLRVPPS+LHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPY GE+IIGKVKESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              +SLGFFEDI+VP+HLLPS SEF PDP N GK RWVWDY+G P DIY
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEEEAEAEEDS
        ETDEI+FRIHSI+YP IPV +QP E +SKF MEE+PKEN+NVK FAPM+VTATID+DGLGP+SWWDGSGD     E EAEAEEDS
Subjt:  ETDEIRFRIHSIEYPAIPV-EQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGD----VEEEAEAEEDS

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

4.8e-21

27.41

Show/hide

Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I   DG++   VVF LI+FRP+ GEV++GK+K   E G+R  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVP----
                                                              V++ FF+DI +P  +L     F PD     +  WVW  EG      
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVP----

Query:  CDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW
         ++Y    +EIRF+I S ++  I  ++ K   +    E        +++ +P  + A+   DGLG  +WW
Subjt:  CDIY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW

P35718 DNA-directed RNA polymerase III subunit RPC8

8.2e-21

25.45

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + P DG++   V F  +VF+P++GE++ G + +    G    
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                     +KVS       LG F+DI +P ++L     +TP+ +      W+W  +      +
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETDE-IRFRIHSIEYPAIPVEQPKER--DSKFPME-------EKPKENINVKAFAPMIVTATIDHDGLGPLSWWD
        + +E IRFRI    +  +  + PKER  + +  +E       E+  +N    A+A   +  +   DG+G +SWW+
Subjt:  ETDE-IRFRIHSIEYPAIPVEQPKER--DSKFPME-------EKPKENINVKAFAPMIVTATIDHDGLGPLSWWD

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

6.7e-23

28.78

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF P++ E++IGK+K          
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCD
                      SP+ V                                   VSLGFF+DI +P   L   ++F     +  +  WVW+YE      D
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCD

Query:  IYET--DEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGS
        +Y    +E+RFR+    +       P   ++    EE PK+       AP  +  +I   GLG LSWW  S
Subjt:  IYET--DEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

3.0e-23

29.48

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF P++ E++IGK+K          
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCD
                      SP+ V                                   VSLGFF+DI +P   L   ++F     +  +  WVW+YE      D
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCD

Query:  IY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW
        +Y    +EIRFR+    +       P   ++    EE PK+       AP  +  +I   GLG LSWW
Subjt:  IY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

1.0e-23

29.85

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF P++ E++IGK+K          
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCD
                      SP+ V                                   VSLGFF+DI +P   L   ++F     +  +  WVW+YE      D
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGV--PCD

Query:  IY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW
        +Y    +EIRFR+    +       P   D+    EE PK+       AP  +  +I   GLG LSWW
Subjt:  IY--ETDEIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWW

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

3.3e-57

42.39

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRP+VGEVI  K KESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              ++LGFF+DI+VP  L+P  +   PDP N  ++ WVW+Y G P + Y
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE
          D   +I+FR+ SI YP++P E+ ++                 K FAPM+VT  +D DGLGP+SWWD    V++E
Subjt:  ETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEE

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

7.3e-49

41.18

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Query:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ
        MFYLS +EH+LRVPP LL+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRP+VGEVI  K KESD NGLR  
Subjt:  MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQ

Query:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY
                                                              ++LGFF+DI+VP  L+P  +   PDP N  ++ WVW+Y G P + Y
Subjt:  NPNGFETLASTCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIY

Query:  ETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTAT
          D   +I+FR+ SI YP++P E+ ++                 K FAPM+VT +
Subjt:  ETD---EIRFRIHSIEYPAIPVEQPKERDSKFPMEEKPKENINVKAFAPMIVTAT

Sequences

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CDS sequence

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ATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGAAACTATTCTTAGATAA
GGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATACAAGGTTGTGTTCACAT
TGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAAGCAAAACCCTAATGGTTTTGAAACCTTAGCCTCC
ACTTGCAGTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTGGGTCAGAGCTCTGCGTTAA
AGTTTCTTCTCGTTGCCGTCTGGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCAGACCCAAATAATGGTG
GAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCCTGCAATCCCAGTGGAG
CAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAACAATTGACCATGACGG
ATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAA

mRNA sequence

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CACATTTTTATCTTCCTCTCTCTCTTCACACGTGCTCCACCTCCCCCCTCTCACTTTTCAGCTTCACTGCCGGCTCCCTCTCTTCTCCGCCGCCGCCGTATTTATCCGTT
CCGTATCGCCGCGCCGCCTCCTTCGTAGCCGGCGTGTACTGGATATTTGACTCTATTGTTACCGGTATCCTCCCAAATTCCATCTATCTGTTTCCCTCTTCCTTTCTCTC
TTTCTCTCTCTCTGGCTCTCACCAGCAGTCATCGAATCAGCCCCCGACTGCAAAAGACCTCTTTTTCAGGCATTACCTCACGCTCCTTCTCTCTATGATTCTTTCTCTCA
AAACCCATCTTATTCTTCCTCAAAATTTTAGTCTTTAGAACACCCCCCATTTCCAAGTACGAAATCATTTGTCTTTTGGGTTTTGAAGAAAGAGGGAGAGAAGAACTAGC
GACTGAATTCGAAGAATCTTCAAAATTCCTGGGTTTCTTCAATCTTTGGATTTGATTTCTGTCTTCTTTAACGAGCCTCAAGGATTGTGTTTTCGTTGGAACTATTAGCC
TATAGAGAACATCCAGATGTTCTATCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCTTGCTTCATCTACCTATCCTTGATGCTATTAAGGGCGAGCTGGAGA
AACTATTCTTAGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCCGTTTATGATATAAGATCGGTCGATGGGGGCTTTATCTTTCCAAGCGATGGTGCTGCAACATAC
AAGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGTGGGGGAGGTAATTATTGGAAAAGTTAAAGAATCAGATGAAAATGGTTTGCGAAAGCAAAACCCTAATGGTTT
TGAAACCTTAGCCTCCACTTGCAGTTCATCACCAGACAGCGTCAAAGTGCCGCCATTCATCATCTCTTCCACCCTCCATCAAGGTTTGTCTCAAAAGTCATTGCTTGGGT
CAGAGCTCTGCGTTAAAGTTTCTTCTCGTTGCCGTCTGGTATCACTTGGATTTTTCGAGGACATTCATGTTCCTGTCCATCTTTTGCCCTCAAAATCTGAATTCACGCCA
GACCCAAATAATGGTGGAAAACTCAGATGGGTGTGGGACTATGAAGGTGTACCGTGCGACATATATGAAACTGATGAGATAAGATTCAGAATACACAGCATAGAGTACCC
TGCAATCCCAGTGGAGCAGCCAAAAGAGAGAGATTCAAAATTTCCAATGGAGGAGAAACCAAAAGAGAACATTAATGTAAAAGCATTTGCTCCCATGATTGTTACTGCAA
CAATTGACCATGACGGATTGGGTCCTCTTTCATGGTGGGATGGTTCGGGAGATGTCGAGGAGGAGGCCGAGGCTGAGGAAGATTCCTAAGATCAGTATCCTATTTAATGG
GTATTCATTCATTCATAACTCTGTATTATACATAATTATCATTTGGCATAGGCATTATAGACATGATAGTCACATATGATCAAGCGAGAAAAAGGTGGTCCGCTTTTCAC
TTTTGTACTCGTAGCGTTGGTTAATTTTGATTATAGGTGTAAATACTACTTAACTTTAGCAGCTTTAATTCATGTACTTTAAAAAAACGGCTTCTTCTGTCTTTGTACTT
TCAAACAGTGTTCATTTAATAAACTAACCTTTCACCTT

Protein sequence

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MFYLSRIEHTLRVPPSLLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPYVGEVIIGKVKESDENGLRKQNPNGFETLAS
TCSSSPDSVKVPPFIISSTLHQGLSQKSLLGSELCVKVSSRCRLVSLGFFEDIHVPVHLLPSKSEFTPDPNNGGKLRWVWDYEGVPCDIYETDEIRFRIHSIEYPAIPVE
QPKERDSKFPMEEKPKENINVKAFAPMIVTATIDHDGLGPLSWWDGSGDVEEEAEAEEDS

Clc09G05170 (gene) of Watermelon (cordophanus) v2 genome