; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G05260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G05260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranscription factor UPBEAT1
Genome locationClcChr09:4182672..4184156
RNA-Seq ExpressionClc09G05260
SyntenyClc09G05260
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]1.1e-3973.84Show/hide
Query:  MGVSQETLLQIQLNMEDQK-TQDR-IILKE-RNNSNG--SIWKKTLSKEEEKEEEE---NGKRKAKS-CN--STRR--RRRSRSNSLILKKRRR------
        MGVSQETLLQIQLNMED K TQDR II+KE RN+S+   SIWKK   KEE  EEE+   N K K KS CN  +TRR  RRRSRSNSLILKKR R      
Subjt:  MGVSQETLLQIQLNMEDQK-TQDR-IILKE-RNNSNG--SIWKKTLSKEEEKEEEE---NGKRKAKS-CN--STRR--RRRSRSNSLILKKRRR------

Query:  SSSDRIEHRVNTLRNLVPNMNNHDDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        SS+ RIE RVN LRNLVPN +NH DDDESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  SSSDRIEHRVNTLRNLVPNMNNHDDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]6.0e-2258.67Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPN
        MG    TLL +QLNME + TQD II       NGSI KK+  +EE+K          KSC   RRRR S+S    L K+ R SS RI  RV TLRNLVPN
Subjt:  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPN

Query:  MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSI
        MNN D+D+++  GSLEQLFT TADYILSLQTRVR M+TLVDVLSG SS I
Subjt:  MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSI

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2455.41Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPN
        MGV  ETLL +QLNM+ + +QD   ++E              ++E++E++E  +  AKS N     RR RS++ ++KKRR  SS RIE RV+TLRNLVPN
Subjt:  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPN

Query:  MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS
        MNN++++ ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-2355.41Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPN
        MGV  ETLL +QLNM+ + +QD                +T  +E+++E++E     AKS N     RR RS++ ++KKRR  SS RIE RV+TLRNLVPN
Subjt:  MGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDRIEHRVNTLRNLVPN

Query:  MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS
        MNN++++ ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSS

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]1.7e-4071.86Show/hide
Query:  MGVSQETLLQIQLNMED-QKTQDRII----LKERNNSNGSIWKKTLSKEEEKEE-EENGKRKAKSCN-STRR--RRRSRSNSLILKKRRR----SSSDRI
        MGVSQETLLQIQLNMED Q TQDRII    ++  N+++ S WKK   KEEE +E    GK    +CN +TRR  RRRSRSNSLILKKR R    SSS RI
Subjt:  MGVSQETLLQIQLNMED-QKTQDRII----LKERNNSNGSIWKKTLSKEEEKEE-EENGKRKAKSCN-STRR--RRRSRSNSLILKKRRR----SSSDRI

Query:  EHRVNTLRNLVPN--MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        E RVNTLR+LVPN   +NHDD DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  EHRVNTLRNLVPN--MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

TrEMBL top hitse value%identityAlignment
A0A0A0K6D9 Uncharacterized protein8.2e-4171.86Show/hide
Query:  MGVSQETLLQIQLNMED-QKTQDRII----LKERNNSNGSIWKKTLSKEEEKEE-EENGKRKAKSCN-STRR--RRRSRSNSLILKKRRR----SSSDRI
        MGVSQETLLQIQLNMED Q TQDRII    ++  N+++ S WKK   KEEE +E    GK    +CN +TRR  RRRSRSNSLILKKR R    SSS RI
Subjt:  MGVSQETLLQIQLNMED-QKTQDRII----LKERNNSNGSIWKKTLSKEEEKEE-EENGKRKAKSCN-STRR--RRRSRSNSLILKKRRR----SSSDRI

Query:  EHRVNTLRNLVPN--MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        E RVNTLR+LVPN   +NHDD DESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  EHRVNTLRNLVPN--MNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

A0A445F6P8 Transcription factor UPBEAT14.2e-0536Show/hide
Query:  MGVSQETLLQIQLNMED--QKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKR---RRSSSDRIEHRVNTLR
        MG+S +T L +  +++D  Q T++     + ++S G +W K L+ +            AK    T+R  R     L++ +R   RR S + I  RV TL+
Subjt:  MGVSQETLLQIQLNMED--QKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKR---RRSSSDRIEHRVNTLR

Query:  NLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG
        +LVPN ++           L+ LF QTADYILSLQTRVR+M+ +V VL+G
Subjt:  NLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG

A0A5A7TXU1 Transcription factor UPBEAT15.3e-4073.84Show/hide
Query:  MGVSQETLLQIQLNMEDQK-TQDR-IILKE-RNNSNG--SIWKKTLSKEEEKEEEE---NGKRKAKS-CN--STRR--RRRSRSNSLILKKRRR------
        MGVSQETLLQIQLNMED K TQDR II+KE RN+S+   SIWKK   KEE  EEE+   N K K KS CN  +TRR  RRRSRSNSLILKKR R      
Subjt:  MGVSQETLLQIQLNMEDQK-TQDR-IILKE-RNNSNG--SIWKKTLSKEEEKEEEE---NGKRKAKS-CN--STRR--RRRSRSNSLILKKRRR------

Query:  SSSDRIEHRVNTLRNLVPNMNNHDDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE
        SS+ RIE RVN LRNLVPN +NH DDDESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLS PSSSIDE
Subjt:  SSSDRIEHRVNTLRNLVPNMNNHDDDDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE

A0A6P6GHL9 transcription factor UPBEAT11.9e-0541.4Show/hide
Query:  MGVSQETLLQ-IQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRR------RSRSNSLILKKR------RRSSSDRI
        MG+SQ +LLQ   L    QK +      ++ NSNGS+W K L        E   KR+ +     R  R      RSR++  IL KR       R  S  I
Subjt:  MGVSQETLLQ-IQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRR------RSRSNSLILKKR------RRSSSDRI

Query:  EHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS
        E RV TL+ LVPN        ES VG L+ LF +TADYILSLQ RVR+M+ +V VL+
Subjt:  EHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS

W9QCV4 Uncharacterized protein4.2e-0536.31Show/hide
Query:  MGVSQETLLQIQLNMEDQKTQDRIIL---KERNNSN----GSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDR-----IE
        MG+SQ +LL++ L   D+   + II     +  NSN     S+W + L            KR+  S +S     RS+    I+ KRRR  + R     + 
Subjt:  MGVSQETLLQIQLNMEDQKTQDRIIL---KERNNSN----GSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRSSSDR-----IE

Query:  HRVNTLRNLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG
         RV TL+ L+PN  +        VG+L+ LF +TADYIL LQ RVR+M+ +V VLSG
Subjt:  HRVNTLRNLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGGTGGTGGTGGTGAGAAAATCATGTGGTTGCATTCCCAATGGATACTACGTGGAAAAAAAAGAGAAACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTT
GCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCGCATCATCCTTAAAGAGAGGAACAACTCAAATGGATCCATATGGAAGAAAACATTATCAAAGGAAGAAG
AAAAAGAAGAAGAAGAAAATGGCAAACGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCA
TCATCAGATAGAATAGAGCACAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGACGATGATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTT
CACTCAGACGGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTATTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGGTGGTGGTGGTGAGAAAATCATGTGGTTGCATTCCCAATGGATACTACGTGGAAAAAAAAGAGAAACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTT
GCAAATTCAACTCAACATGGAAGATCAAAAAACACAAGATCGCATCATCCTTAAAGAGAGGAACAACTCAAATGGATCCATATGGAAGAAAACATTATCAAAGGAAGAAG
AAAAAGAAGAAGAAGAAAATGGCAAACGCAAAGCCAAAAGTTGCAATAGCACAAGAAGAAGAAGAAGATCAAGAAGCAACTCATTGATATTGAAGAAGAGAAGAAGATCA
TCATCAGATAGAATAGAGCACAGGGTCAACACTTTGAGAAACCTTGTACCAAACATGAACAACCACGACGATGATGACGAAAGCTGTGTCGGATCATTAGAACAGCTTTT
CACTCAGACGGCTGATTATATATTGTCGTTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTCCTTCTTCTTCTATTGATGAGTGA
Protein sequenceShow/hide protein sequence
MVVVVVVRKSCGCIPNGYYVEKKEKQNQMGVSQETLLQIQLNMEDQKTQDRIILKERNNSNGSIWKKTLSKEEEKEEEENGKRKAKSCNSTRRRRRSRSNSLILKKRRRS
SSDRIEHRVNTLRNLVPNMNNHDDDDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSGPSSSIDE