; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G05680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G05680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationClcChr09:4476568..4477609
RNA-Seq ExpressionClc09G05680
SyntenyClc09G05680
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]1.2e-6186.79Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MAN I IFLT FLFSL K SLLS A+AV KDQV CSMCS CDNPCQLPPPPPPPPVV+CPP   PPPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SSVQPYPP+DGGQFPG+APPPPNPILPYFPYYYY+PPSAS KSVPFSWK LPLPFLII+
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

XP_022953998.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]3.0e-4976.4Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPP-----PPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP
        MA+L SIFLT+FL SLSK S LS  T   +DQV CSMC++CDNPCQLPPPPP     PPP    PPPPPPPSPPPPL T +CPPPPSPPSCD CVYPSPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPP-----PPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP

Query:  PPSSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PPSS+QPY P DGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PPSSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.7e-5279.25Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPP---VVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MA+L SIFLT+FLFSLSK S LS AT   +DQV CSMCS+CDNPCQLPPPPPPPP   VVDCPPPP P  PPPPLP  +CPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPP---VVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SS+QPY P DGGQ+PG+APPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

XP_023514546.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]1.1e-4669.62Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSV
        M NL+SI+ T  LF+LSK S LS ATAV KDQV CSMCS+CDNPCQLPPPPPPP                  PTSQCPPPP PPSC TC++PSP PPSSV
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSV

Query:  QPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL
        QPY PADGGQFPGLAPPPPNPILPY+PYYYY+PP+AS +SV  SWK LPL  LII+CL
Subjt:  QPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]1.7e-5280.25Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDC-PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS
        MA+L SIFLT+FL SLSK S LS AT   +DQV CSMCS+CDNPCQL  PPPPP +VDC PPPPPPPSPPPPLPT +CPPPPSPPSCD CVYPSPPPPSS
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDC-PPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSS

Query:  VQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        +QPY P DGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  VQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein6.7e-6388.68Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPP---PPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MANLISIFLT FL SL+K SLLS ATAV KDQV CSMCSTCDNPCQLPPPPPPPPVV+CPPP   PPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPP---PPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SSVQPYPP+ GGQFPG+APPPPNPILPYFPYYYY+PPSAS KSVPFSWKFL LPFLIIL
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A5D3D2P5 Extensin-25.6e-6286.79Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MAN I IFLT FLFSL K SLLS A+AV KDQV CSMCS CDNPCQLPPPPPPPPVV+CPP   PPPPPSPPPPLPTSQCPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SSVQPYPP+DGGQFPG+APPPPNPILPYFPYYYY+PPSAS KSVPFSWK LPLPFLII+
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A6J1GPW6 leucine-rich repeat extensin-like protein 31.4e-4976.4Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPP-----PPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP
        MA+L SIFLT+FL SLSK S LS  T   +DQV CSMC++CDNPCQLPPPPP     PPP    PPPPPPPSPPPPL T +CPPPPSPPSCD CVYPSPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPP-----PPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPP

Query:  PPSSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        PPSS+QPY P DGGQ+PGLAPPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  PPSSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A6J1JMT5 leucine-rich repeat extensin-like protein 38.2e-5379.25Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPP---VVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP
        MA+L SIFLT+FLFSLSK S LS AT   +DQV CSMCS+CDNPCQLPPPPPPPP   VVDCPPPP P  PPPPLP  +CPPPPSPPSCD CVYPSPPPP
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPP---VVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL
        SS+QPY P DGGQ+PG+APPPPNPILPYFPYYYYTPPS S KSVPFSWKFLPL F++ L
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIIL

A0A6J1KR41 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like2.2e-4569.81Show/hide
Query:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSV
        MANL+SI+ T  LF+LSK S LS ATAV KDQV CSMCS+CDNPCQLPPPPPPPP   CPPPPPPP                PPSC TCV+PSP PP+SV
Subjt:  MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSV

Query:  QPYPPADGGQFPGLA-PPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL
        QPY PADGGQFPGLA PPPPNPILPY+PYYYY+PP+AS +SV  SWK LPL  LII+CL
Subjt:  QPYPPADGGQFPGLA-PPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein1.1e-0442.19Show/hide
Query:  DQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQP-YPPADGGQFPGLAPPPPNPILPYFPYY
        + VSC+MCS+CDNPC       P P    PPPPPP S          PPPPS  S     YP P         YPP   G +    PPPPNPI+PYFP+Y
Subjt:  DQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQP-YPPADGGQFPGLAPPPPNPILPYFPYY

Query:  YYTPPSASAKSVPFSWKFLPLPFLIILC
        Y+TPP   + S       L   F ++LC
Subjt:  YYTPPSASAKSVPFSWKFLPLPFLIILC

AT3G22800.1 Leucine-rich repeat (LRR) family protein6.9e-0453.68Show/hide
Query:  CDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCP-PPPSPPSCDTCVYPSPPPPSSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPP
        C  P   PPPPPPPP    PPPPPPP PPPP P    P PPP PPS    VYP PPPP  V P PP+    +P   PPPP+P     PY Y +PP
Subjt:  CDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCP-PPPSPPSCDTCVYPSPPPPSSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPP

AT4G16140.1 proline-rich family protein1.4e-0944.22Show/hide
Query:  IFLTVFLFSLSKVSLLSFATAVVKDQVS-CSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPS----------PPSCDTCVYPSPP
        +FL  F F+ +        T     Q++ C+MC++CDNPCQ  P PPPPP     P PPPPSP     T+ CPPPPS          PP+  +  Y  PP
Subjt:  IFLTVFLFSLSKVSLLSFATAVVKDQVS-CSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPS----------PPSCDTCVYPSPP

Query:  PPSSVQPY--PPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS
          SS   Y  PP  GG +P    PPPNPI+PYFP+YYY PP  S  S
Subjt:  PPSSVQPY--PPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS

AT5G49280.1 hydroxyproline-rich glycoprotein family protein3.1e-1244.44Show/hide
Query:  TVFLFSLSK--VSLLSFATAVV--KDQ-VSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSC---DTCVYPSP-------
        T  L++LS   V LL   T  V  KD+ VSC+MCS+CDNPC         PV   PPPP P  PPP  PT+ CPPPPSPPS     +  YP P       
Subjt:  TVFLFSLSK--VSLLSFATAVV--KDQ-VSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSC---DTCVYPSP-------

Query:  --PPP----SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS-VPFSWKFLPLPFLIILCL
          PPP         YPP   G +P   PPPPNPI+PYFP+YY+TPP  S       S+  +   F + LCL
Subjt:  --PPP----SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYTPPSASAKS-VPFSWKFLPLPFLIILCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAATCTCATCTCCATTTTCCTTACTGTCTTCCTCTTTTCACTCTCCAAAGTTTCCCTTCTCTCTTTCGCCACCGCCGTGGTCAAGGATCAGGTTAGCTGTTCCAT
GTGCTCAACTTGTGACAACCCATGCCAACTCCCCCCGCCGCCGCCTCCTCCGCCGGTTGTTGACTGCCCGCCGCCCCCTCCGCCTCCATCTCCACCACCGCCGCTCCCCA
CTTCCCAATGCCCTCCGCCTCCGTCGCCTCCCTCCTGTGATACATGCGTCTACCCTTCTCCGCCGCCGCCGTCCTCCGTCCAGCCGTACCCTCCGGCCGACGGTGGCCAA
TTTCCCGGACTTGCTCCGCCGCCGCCGAACCCAATTTTACCGTATTTTCCTTACTATTATTACACTCCCCCCTCTGCTTCTGCCAAATCCGTTCCATTTTCATGGAAATT
TTTGCCTCTGCCTTTCTTAATCATCCTTTGCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ACTACAAACACATAATTAAAGAAAAACTTAAAATGGGGAAGAGCTAAGATGAGCACTCCCCCAAAGTCTGTACCTTTATATTCCAATTTCCTCTACCATTTGATGGTATA
GCTTCCAATTCACATCAATGGCCAATCTCATCTCCATTTTCCTTACTGTCTTCCTCTTTTCACTCTCCAAAGTTTCCCTTCTCTCTTTCGCCACCGCCGTGGTCAAGGAT
CAGGTTAGCTGTTCCATGTGCTCAACTTGTGACAACCCATGCCAACTCCCCCCGCCGCCGCCTCCTCCGCCGGTTGTTGACTGCCCGCCGCCCCCTCCGCCTCCATCTCC
ACCACCGCCGCTCCCCACTTCCCAATGCCCTCCGCCTCCGTCGCCTCCCTCCTGTGATACATGCGTCTACCCTTCTCCGCCGCCGCCGTCCTCCGTCCAGCCGTACCCTC
CGGCCGACGGTGGCCAATTTCCCGGACTTGCTCCGCCGCCGCCGAACCCAATTTTACCGTATTTTCCTTACTATTATTACACTCCCCCCTCTGCTTCTGCCAAATCCGTT
CCATTTTCATGGAAATTTTTGCCTCTGCCTTTCTTAATCATCCTTTGCCTCTAGAAAAATGAATTCTCCATTGTTGGCAGAGAAATGGGTTTGATTTATTTTTCCTCAGA
AACATTCCTGCCATTGAAGAGTGGTGAAAGAGGACGAGGGGAGATCAGAAGAAGAAGAAGGGCGTAGTTAAATTGAGCAAAATTACTTGTAGACTGATTATGCATTTACG
AATTGAGACGTATTAAGGATTCTTTATTTTAATTTCTTTGAATAATTTCTTCGTAGTTTACATATTTTAATTGAAATAGCAATGTATTCGAAAGGAAGGAGAAATCTAAT
GTAATCTTAATCTAATGTATTTTGGATTAGTCTTTGACATAAAACCTTAAGTTTGTCTAATAATATTTATTTAATTTTTTCATAAATTACATAATTGAAAGTTGTTCTCG
ATACAATAATTGTGGGTATAAAAATGTGAGTCATAGACTTCGAGAGATTCAA
Protein sequenceShow/hide protein sequence
MANLISIFLTVFLFSLSKVSLLSFATAVVKDQVSCSMCSTCDNPCQLPPPPPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPSPPSCDTCVYPSPPPPSSVQPYPPADGGQ
FPGLAPPPPNPILPYFPYYYYTPPSASAKSVPFSWKFLPLPFLIILCL