; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G05730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G05730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionType B response regulator
Genome locationClcChr09:4525208..4527688
RNA-Seq ExpressionClc09G05730
SyntenyClc09G05730
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR044841 - Transcription factor LUX/BOA-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046668.1 type B response regulator [Cucumis melo var. makuwa]5.2e-5648.91Show/hide
Query:  MSVDYRHLVIVDNSA-APTAG------------DLGGPSGAHGGEINYFNL-EAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMR
        M VDYR+LV  +NSA  PTA             +LGGPS A GGEINYF++ EA+Q+R  IG ++ RFIWT E HQIF++AVN+LTL++AVPRKILEYMR
Subjt:  MSVDYRHLVIVDNSA-APTAG------------DLGGPSGAHGGEINYFNL-EAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMR

Query:  IYGVQNITRAIVASHLQKYRLNLKR-HVEVDKASKLPSQSISLNVTKRRNQEEDIRK------------------------------QVLQEKLI-FEMK
          GVQNITRAIVASHLQKYRL LK+ HVEVDKAS++P ++IS N T  RNQEE++R                               Q LQE L+ +EM 
Subjt:  IYGVQNITRAIVASHLQKYRLNLKR-HVEVDKASKLPSQSISLNVTKRRNQEEDIRK------------------------------QVLQEKLI-FEMK

Query:  HHQWPLI-ESLLGPSI-KLHMMSFPHLYNKNEHLRLPNL-------------------PNQFSRYVDGNTNNNLIAPLINNRLSNDV-SND-CLYLKILR
        + +WPL  ESL  P + + +M S P+LY KNE   L NL                   PNQF+RY DGN NNN++A LIN+ LSN V  ND   Y K+LR
Subjt:  HHQWPLI-ESLLGPSI-KLHMMSFPHLYNKNEHLRLPNL-------------------PNQFSRYVDGNTNNNLIAPLINNRLSNDV-SND-CLYLKILR

Query:  E---YEEAYKDFYGHSMHIQP
        E   Y+E   D +   M+I+P
Subjt:  E---YEEAYKDFYGHSMHIQP

KAE8009422.1 hypothetical protein FH972_005859 [Carpinus fangiana]1.7e-1160Show/hide
Query:  IGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        +GAKK+R IWT +LH  F+  VN L L++AVP+KILE M+  GV N+TR  VASHLQKYRL L++
Subjt:  IGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

KAG6593219.1 Two-component response regulator ORR24, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1948.46Show/hide
Query:  GGPSGAHGGEINYFNLEA-----IQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRH-VEVD
        GG S   GGE+   ++E+     I++R+E   +K RF+WTDELH+IF+ A N  TL++AVPRKILE+MR +GV+NITRAI+ASHLQKYRL+LKR+ ++VD
Subjt:  GGPSGAHGGEINYFNLEA-----IQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRH-VEVD

Query:  KA------SKLPSQSISLNVTKRRNQEEDI
        K+      S  PS  I     +R    + +
Subjt:  KA------SKLPSQSISLNVTKRRNQEEDI

KAG7180408.1 hypothetical protein NADE_007677 [Chlorella desiccata (nom. nud.)]2.1e-1241.6Show/hide
Query:  RHLVIVDNSAAPTAGDLGGPSGAHGGEINYFNLEAIQKRKE--IGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQ
        R  V +  +   +A D  G S  HG +      EA++   E   G+KKAR +W+ E+HQ F+ AVN L ++KAVP++IL+ M + G   +TR  VASHLQ
Subjt:  RHLVIVDNSAAPTAGDLGGPSGAHGGEINYFNLEAIQKRKE--IGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQ

Query:  KYRLNLKR--HVEVDKASKLPSQSI
        KYRL LKR   V+  K  +LP   +
Subjt:  KYRLNLKR--HVEVDKASKLPSQSI

XP_038896346.1 two-component response regulator ARR14-like [Benincasa hispida]3.2e-1337.23Show/hide
Query:  AKKARFIWTDELHQIFIDAVNSLTLE--KAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVE-VDKASKLPSQSIS-------------LNVTK
        +KK RFIWTDE HQIF+DA+N +T +  K VP KI++YM+  GV +I+R  +ASHLQKYR  +K+    +DK S  P+  ++               +TK
Subjt:  AKKARFIWTDELHQIFIDAVNSLTLE--KAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVE-VDKASKLPSQSIS-------------LNVTK

Query:  RRNQEEDIRKQVLQEKLIFEMKHH--QWPLIESLLGP
         +N  +  ++    E ++F+   H   W  +E L+ P
Subjt:  RRNQEEDIRKQVLQEKLIFEMKHH--QWPLIESLLGP

TrEMBL top hitse value%identityAlignment
A0A0A0KB26 Uncharacterized protein6.4e-2052.54Show/hide
Query:  MSVDYRHLVIVDNSAAPTA------------GDLGGPSGAHGG-EINYFNLEAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRI
        M V+ R L   +NSA PTA            G+LGG S A  G + N F+ +   +R+EI  ++ RFIWTDE H+IF++AV+ LTL++AVPRKILEYM  
Subjt:  MSVDYRHLVIVDNSAAPTA------------GDLGGPSGAHGG-EINYFNLEAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRI

Query:  YGVQNITRAIVASHLQKY
         GVQNITRAIVASHLQ +
Subjt:  YGVQNITRAIVASHLQKY

A0A0A0KB26 Uncharacterized protein2.6e-0545.45Show/hide
Query:  RNQEEDIRKQVLQE-KLIFEMKHHQ-WPLIESLLGPSIKLHMMSFPHLYNKNEHLRLPNLPNQFSRYVDGNTNNNLI
        R QE ++R Q  QE + + +M   Q WPL ESL  P +    +  P  + KNE   L NLPNQF  YVDGN N N+I
Subjt:  RNQEEDIRKQVLQE-KLIFEMKHHQ-WPLIESLLGPSIKLHMMSFPHLYNKNEHLRLPNLPNQFSRYVDGNTNNNLI

A0A0A0KB26 Uncharacterized protein8.4e-1260Show/hide
Query:  IGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        +GAKK+R IWT +LH  F+  VN L L++AVP+KILE M+  GV N+TR  VASHLQKYRL L++
Subjt:  IGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

A0A444ZUP2 Response regulatory domain-containing protein1.1e-1146.07Show/hide
Query:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLPSQSISLNVTKRRNQE
        +KK RF+WT+E HQ+F+DAV  L ++KAVPRKILE+M    + ++ R  VASHLQKYR++LK+ +E  K +    +   +NV +  N++
Subjt:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLPSQSISLNVTKRRNQE

A0A5D3D1X5 Type B response regulator2.5e-5648.91Show/hide
Query:  MSVDYRHLVIVDNSA-APTAG------------DLGGPSGAHGGEINYFNL-EAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMR
        M VDYR+LV  +NSA  PTA             +LGGPS A GGEINYF++ EA+Q+R  IG ++ RFIWT E HQIF++AVN+LTL++AVPRKILEYMR
Subjt:  MSVDYRHLVIVDNSA-APTAG------------DLGGPSGAHGGEINYFNL-EAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMR

Query:  IYGVQNITRAIVASHLQKYRLNLKR-HVEVDKASKLPSQSISLNVTKRRNQEEDIRK------------------------------QVLQEKLI-FEMK
          GVQNITRAIVASHLQKYRL LK+ HVEVDKAS++P ++IS N T  RNQEE++R                               Q LQE L+ +EM 
Subjt:  IYGVQNITRAIVASHLQKYRLNLKR-HVEVDKASKLPSQSISLNVTKRRNQEEDIRK------------------------------QVLQEKLI-FEMK

Query:  HHQWPLI-ESLLGPSI-KLHMMSFPHLYNKNEHLRLPNL-------------------PNQFSRYVDGNTNNNLIAPLINNRLSNDV-SND-CLYLKILR
        + +WPL  ESL  P + + +M S P+LY KNE   L NL                   PNQF+RY DGN NNN++A LIN+ LSN V  ND   Y K+LR
Subjt:  HHQWPLI-ESLLGPSI-KLHMMSFPHLYNKNEHLRLPNL-------------------PNQFSRYVDGNTNNNLIAPLINNRLSNDV-SND-CLYLKILR

Query:  E---YEEAYKDFYGHSMHIQP
        E   Y+E   D +   M+I+P
Subjt:  E---YEEAYKDFYGHSMHIQP

A0A7S3BXY7 Hypothetical protein1.1e-1144.14Show/hide
Query:  KRKEIGA--KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR----HVEVDKASKLPSQSISLNVTKRRNQ
        KRK+ GA  KK R +W+ ELHQ F++AVN+L ++KAVP++IL+ M + G   +TR  VASHLQKYRL LKR      E  +  +LP +   +   +   Q
Subjt:  KRKEIGA--KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR----HVEVDKASKLPSQSISLNVTKRRNQ

Query:  EEDIRKQVLQE
        EE +++Q  Q+
Subjt:  EEDIRKQVLQE

SwissProt top hitse value%identityAlignment
A2X1N2 Two-component response regulator ORR242.1e-1262.9Show/hide
Query:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        KK R +W+ ELH+ F+ AVN L +EKAVP+KIL+ M    V+NITR  VASHLQKYRL LKR
Subjt:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

A2XE31 Two-component response regulator ORR218.1e-1258.73Show/hide
Query:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        +KK R +W+ ELHQ F++AVN L ++KAVP+KILE M + G   +TR  VASHLQK+RL LKR
Subjt:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

Q6H805 Two-component response regulator ORR242.1e-1262.9Show/hide
Query:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        KK R +W+ ELH+ F+ AVN L +EKAVP+KIL+ M    V+NITR  VASHLQKYRL LKR
Subjt:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

Q8H7S7 Two-component response regulator ORR218.1e-1258.73Show/hide
Query:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        +KK R +W+ ELHQ F++AVN L ++KAVP+KILE M + G   +TR  VASHLQK+RL LKR
Subjt:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

Q9FGT7 Two-component response regulator ARR181.1e-1153.42Show/hide
Query:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLP
        KK R +W+ ELHQ F+ AV  L L+KAVP+KIL+ M I G   +TR  VASHLQKYRL LK+  E  + +  P
Subjt:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLP

Arabidopsis top hitse value%identityAlignment
AT2G01760.1 response regulator 141.7e-1249.41Show/hide
Query:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLPSQSISLNVTKR
        +KK+R +W+ ELHQ F++AVN L ++KAVP++ILE M + G   ++R  VASHLQK+RL LKR       S   SQS     TKR
Subjt:  AKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLPSQSISLNVTKR

AT3G16857.1 response regulator 19.8e-1359.68Show/hide
Query:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        KK R +W+ ELHQ F+ AVN L +EKAVP+KILE M + G   +TR  VASHLQKYR+ L+R
Subjt:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

AT3G16857.2 response regulator 19.8e-1359.68Show/hide
Query:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        KK R +W+ ELHQ F+ AVN L +EKAVP+KILE M + G   +TR  VASHLQKYR+ L+R
Subjt:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

AT4G16110.1 response regulator 21.7e-1253.62Show/hide
Query:  KRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR
        K      KK R +W+ ELHQ F+ AVN L ++KAVP+KILE M + G   +TR  VASHLQKYR+ L+R
Subjt:  KRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKR

AT5G58080.1 response regulator 187.5e-1353.42Show/hide
Query:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLP
        KK R +W+ ELHQ F+ AV  L L+KAVP+KIL+ M I G   +TR  VASHLQKYRL LK+  E  + +  P
Subjt:  KKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLKRHVEVDKASKLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTGACTATAGACACTTGGTGATCGTCGATAACTCAGCCGCCCCGACCGCCGGAGATCTGGGTGGTCCTTCCGGCGCACATGGAGGAGAAATCAATTATTTTAA
TCTTGAAGCCATACAGAAAAGAAAAGAGATAGGAGCTAAAAAGGCACGTTTCATTTGGACGGATGAACTCCACCAAATATTTATTGATGCTGTTAATAGTTTAACTCTAG
AAAAAGCTGTTCCGAGGAAAATTTTAGAATACATGAGAATTTATGGTGTTCAAAATATCACAAGAGCAATTGTTGCTAGTCACCTTCAGAAATATAGGTTGAATCTTAAA
AGACATGTCGAGGTCGATAAAGCATCAAAGTTACCCTCCCAATCAATCTCTCTCAATGTGACCAAAAGAAGAAATCAAGAAGAAGACATAAGAAAACAAGTGTTGCAAGA
AAAGTTGATTTTTGAAATGAAACATCATCAGTGGCCTCTAATTGAATCTCTATTAGGACCGAGCATAAAGCTACACATGATGTCTTTTCCTCATCTTTATAACAAAAATG
AACATCTTCGTCTTCCAAATCTACCTAATCAATTCTCTAGATATGTTGATGGGAATACTAATAACAATCTTATTGCCCCTCTCATCAACAATAGATTGAGCAATGATGTT
TCAAATGATTGTCTCTATCTCAAGATTTTGAGAGAATATGAAGAAGCTTACAAAGATTTCTATGGTCATAGTATGCATATCCAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTGACTATAGACACTTGGTGATCGTCGATAACTCAGCCGCCCCGACCGCCGGAGATCTGGGTGGTCCTTCCGGCGCACATGGAGGAGAAATCAATTATTTTAA
TCTTGAAGCCATACAGAAAAGAAAAGAGATAGGAGCTAAAAAGGCACGTTTCATTTGGACGGATGAACTCCACCAAATATTTATTGATGCTGTTAATAGTTTAACTCTAG
AAAAAGCTGTTCCGAGGAAAATTTTAGAATACATGAGAATTTATGGTGTTCAAAATATCACAAGAGCAATTGTTGCTAGTCACCTTCAGAAATATAGGTTGAATCTTAAA
AGACATGTCGAGGTCGATAAAGCATCAAAGTTACCCTCCCAATCAATCTCTCTCAATGTGACCAAAAGAAGAAATCAAGAAGAAGACATAAGAAAACAAGTGTTGCAAGA
AAAGTTGATTTTTGAAATGAAACATCATCAGTGGCCTCTAATTGAATCTCTATTAGGACCGAGCATAAAGCTACACATGATGTCTTTTCCTCATCTTTATAACAAAAATG
AACATCTTCGTCTTCCAAATCTACCTAATCAATTCTCTAGATATGTTGATGGGAATACTAATAACAATCTTATTGCCCCTCTCATCAACAATAGATTGAGCAATGATGTT
TCAAATGATTGTCTCTATCTCAAGATTTTGAGAGAATATGAAGAAGCTTACAAAGATTTCTATGGTCATAGTATGCATATCCAACCCTAG
Protein sequenceShow/hide protein sequence
MSVDYRHLVIVDNSAAPTAGDLGGPSGAHGGEINYFNLEAIQKRKEIGAKKARFIWTDELHQIFIDAVNSLTLEKAVPRKILEYMRIYGVQNITRAIVASHLQKYRLNLK
RHVEVDKASKLPSQSISLNVTKRRNQEEDIRKQVLQEKLIFEMKHHQWPLIESLLGPSIKLHMMSFPHLYNKNEHLRLPNLPNQFSRYVDGNTNNNLIAPLINNRLSNDV
SNDCLYLKILREYEEAYKDFYGHSMHIQP