; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G06010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G06010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionlarge ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like
Genome locationClcChr09:4722882..4725328
RNA-Seq ExpressionClc09G06010
SyntenyClc09G06010
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR003772 - Large ribosomal RNA subunit accumulation protein YceD


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]4.2e-16881.07Show/hide
Query:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM
        I+FF  AS KF PFS T G+           I+F   V                FKM ATFPTSS+VSSSHS EFI V Y KSKGNVSF+SHFRVPW+FM
Subjt:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM

Query:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
        R IQPSLGDPCIK+KSTSIKCVKPTYQSLFED+S+ITDW DQEGDIEEMGSPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
Subjt:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK

Query:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL
         V+DYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQL
Subjt:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL

Query:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        YFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]3.6e-16783.8Show/hide
Query:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST
        I+FF  AS KF PFS T G  L          F    FKM ATFPTSS+VSSSHS EFI V Y KSKGNVSF+S  R PW+FMR IQPSLGDPCIK+KST
Subjt:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST

Query:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV
        SIKCVKPTYQSLFED+S+ITDW DQEGDIEEMGSPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK V+DYPFGTPVQISVDV
Subjt:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV

Query:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD
        TRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRD
Subjt:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD

Query:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        ILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]6.1e-16780.53Show/hide
Query:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM
        I+FF  AS KF PFS T G+           I+F   V                FKM ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FM
Subjt:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM

Query:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
        R IQPSLGDPCIK+KSTSIKCVKPTYQSLFED+S+ITDW DQEGDIEEM SPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
Subjt:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK

Query:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL
         V+DYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQL
Subjt:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL

Query:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        YFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]1.9e-16884.08Show/hide
Query:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST
        I+FF  AS KF PFS T G  L          F    FKM ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FMR IQPSLGDPCIK+KST
Subjt:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST

Query:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV
        SIKCVKPTYQSLFED+S+ITDW DQEGDIEEM SPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK V+DYPFGTPVQISVDV
Subjt:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV

Query:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD
        TRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRD
Subjt:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD

Query:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        ILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]2.1e-16792.19Show/hide
Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGA
        MSATFPTSS+VSSSHSNEFIKV YLKSKGNVSF SH RVPWKFMR IQPSLGD CI LKSTSIKCVKPTYQSLFED+S+ITDW D +GDIEEMGSPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        VIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRV K V+DYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCE APEC+FSNFSI+
Subjt:  VIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+GQDMFKTYDGNSDEDDEEL DLDDQLYFPL+EKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLRRQMQKNSK
        KKNDFGPLGNL++QMQKNSK
Subjt:  KKNDFGPLGNLRRQMQKNSK

TrEMBL top hitse value%identityAlignment
A0A0A0KAY7 Uncharacterized protein5.4e-16187.46Show/hide
Query:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGA
        M ATFPTSS+VSSSHSNEFI V Y KSKG VSF SHFRVPW+ +R IQPSLGDPCIK+KST+IKCVKPTYQSLFED+S+ITDW DQEGDIEEM SPWEGA
Subjt:  MSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGA

Query:  VIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV
        +IY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK V+DYPFGTPVQISVDVTRK KKLRLDGIVKTVITLNCY CCEPAPEC+FSNFSI+
Subjt:  VIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIV

Query:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV
        LSEEPIEEPDVINMGII+G+DMFKT +GNSDEDDEEL DLDDQLYFP + KEIDISKNIRDILHLEITMN ICDPGCKG+CLNCGINLNTGSC CSKQAV
Subjt:  LSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAV

Query:  KKNDFGPLGNLRRQMQKNS
        KKNDFGPLG+L+R+MQ NS
Subjt:  KKNDFGPLGNLRRQMQKNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X29.2e-16984.08Show/hide
Query:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST
        I+FF  AS KF PFS T G  L          F    FKM ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FMR IQPSLGDPCIK+KST
Subjt:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST

Query:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV
        SIKCVKPTYQSLFED+S+ITDW DQEGDIEEM SPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK V+DYPFGTPVQISVDV
Subjt:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV

Query:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD
        TRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRD
Subjt:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD

Query:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        ILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X13.0e-16780.53Show/hide
Query:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM
        I+FF  AS KF PFS T G+           I+F   V                FKM ATFPTSS+VSSSHS EFI V Y +SKGNVSF+SHFRVPW+FM
Subjt:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM

Query:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
        R IQPSLGDPCIK+KSTSIKCVKPTYQSLFED+S+ITDW DQEGDIEEM SPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
Subjt:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK

Query:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL
         V+DYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQL
Subjt:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL

Query:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        YFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

A0A5A7VN29 Uncharacterized protein2.0e-16881.07Show/hide
Query:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM
        I+FF  AS KF PFS T G+           I+F   V                FKM ATFPTSS+VSSSHS EFI V Y KSKGNVSF+SHFRVPW+FM
Subjt:  IEFFCTASPKFLPFSLTQGY---------SLIQFLCAV----------------FKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFM

Query:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
        R IQPSLGDPCIK+KSTSIKCVKPTYQSLFED+S+ITDW DQEGDIEEMGSPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK
Subjt:  RYIQPSLGDPCIKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK

Query:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL
         V+DYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQL
Subjt:  AVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQL

Query:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        YFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  YFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

A0A5D3D2J4 Uncharacterized protein1.7e-16783.8Show/hide
Query:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST
        I+FF  AS KF PFS T G  L          F    FKM ATFPTSS+VSSSHS EFI V Y KSKGNVSF+S  R PW+FMR IQPSLGDPCIK+KST
Subjt:  IEFFCTASPKFLPFSLTQGYSLI--------QFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKST

Query:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV
        SIKCVKPTYQSLFED+S+ITDW DQEGDIEEMGSPWEGAVIY+RNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTK V+DYPFGTPVQISVDV
Subjt:  SIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDV

Query:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD
        TRK+KKLRLDGIVKTVITLNCYRCCEPAPEC+FSNFSI+LSEEPIEEPDVINMGII+GQD+FKT +GNSDEDDEE  DLDDQLYFP V+KEIDISKNIRD
Subjt:  TRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRD

Query:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS
        ILHLEITMN IC+PGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNL+R+MQ NS
Subjt:  ILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQKNS

SwissProt top hitse value%identityAlignment
A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic2.7e-5350.22Show/hide
Query:  VDQEGDIEEMG--SPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR--VTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVIT
        V+ E D  + G  SPWEGAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL      +    P  TPV +SVDVTR+  +LRLDGIV+TVIT
Subjt:  VDQEGDIEEMG--SPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR--VTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVIT

Query:  LNCYRCCEPAPECVFSNFSIVLSEEPI-EEPDVINMGII-------NGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNA
        L C+RC EPAP+ +F+NFS++L+E+P+ EEPD   +G I        G  +    DG+ D       D DD+L+FP  +KEIDISK+IRD++HLEIT++A
Subjt:  LNCYRCCEPAPECVFSNFSIVLSEEPI-EEPDVINMGII-------NGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNA

Query:  ICDPGCKGMCLNCGINLN-TGSCNCSKQAVK
        +C+P CKG+CL CG NLN T SC C  + V+
Subjt:  ICDPGCKGMCLNCGINLN-TGSCNCSKQAVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic9.7e-8359.92Show/hide
Query:  IKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPV
        IKL   +   +  + +S  E  ++  DW DQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK V+DYP GTPV
Subjt:  IKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPV

Query:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI
        Q+SVDV RK+KKLRLDGIV+TVITL C RC E   E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+   D +D+L+FP   KEIDI
Subjt:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI

Query:  SKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQK
        SK+IRD++HLEIT+ AICD  CKGMCL CG NLN   C+C ++  K   +GPLGNLR QMQ+
Subjt:  SKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQK

Arabidopsis top hitse value%identityAlignment
AT3G19810.1 Protein of unknown function (DUF177)6.9e-8459.92Show/hide
Query:  IKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPV
        IKL   +   +  + +S  E  ++  DW DQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK V+DYP GTPV
Subjt:  IKLKSTSIKCVKPTYQSLFEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPV

Query:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI
        Q+SVDV RK+KKLRLDGIV+TVITL C RC E   E +FSNFS++L+EEP+EEPDVI++G   G D  K    + D++D+   D +D+L+FP   KEIDI
Subjt:  QISVDVTRKEKKLRLDGIVKTVITLNCYRCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDI

Query:  SKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQK
        SK+IRD++HLEIT+ AICD  CKGMCL CG NLN   C+C ++  K   +GPLGNLR QMQ+
Subjt:  SKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSCNCSKQAVKKNDFGPLGNLRRQMQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTAAAGCCACGGATAGAGTTTTTCTGCACAGCGTCACCAAAATTTCTACCATTTTCGCTAACTCAGGGATATTCCCTTATCCAATTTCTTTGTGCAGTATTTAA
GATGTCAGCCACATTCCCCACATCATCCTTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGTTCTCTACTTGAAATCCAAAGGGAATGTTTCTTTCCATTCGCATT
TCCGAGTTCCATGGAAATTTATGAGATATATTCAGCCAAGCTTGGGAGACCCATGTATTAAGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTT
TTTGAGGACGATTCAGTAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGATCACCTTGGGAAGGAGCAGTTATTTACCAGAGGAACTCTTCAGTTTC
TCATGTGGAGTATTGTACAACATTAGAGAGGCTTGGATTAGAGAAGCTTTCAACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACGAAGGCTGTGA
GAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAAGTTAAGGCTGGATGGGATAGTTAAAACTGTCATCACTCTCAATTGTTAT
AGGTGCTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTGTACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAATGGGCA
GGATATGTTCAAGACGTATGATGGAAATAGTGATGAAGATGATGAAGAGTTGTTTGATTTGGATGATCAACTCTATTTTCCTCTTGTAGAGAAAGAAATAGATATATCAA
AGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCAATATGTGATCCGGGATGCAAAGGTATGTGTCTGAATTGTGGTATAAATTTGAATACTGGAAGCTGT
AACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAGAAGGCAAATGCAAAAAAATTCTAAGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTAAAGCCACGGATAGAGTTTTTCTGCACAGCGTCACCAAAATTTCTACCATTTTCGCTAACTCAGGGATATTCCCTTATCCAATTTCTTTGTGCAGTATTTAA
GATGTCAGCCACATTCCCCACATCATCCTTAGTTTCATCTTCTCATTCCAACGAATTTATTAAGGTTCTCTACTTGAAATCCAAAGGGAATGTTTCTTTCCATTCGCATT
TCCGAGTTCCATGGAAATTTATGAGATATATTCAGCCAAGCTTGGGAGACCCATGTATTAAGCTGAAATCTACTTCCATAAAGTGTGTGAAACCTACTTATCAATCCCTT
TTTGAGGACGATTCAGTAATTACTGATTGGGTGGATCAAGAAGGGGATATTGAGGAGATGGGATCACCTTGGGAAGGAGCAGTTATTTACCAGAGGAACTCTTCAGTTTC
TCATGTGGAGTATTGTACAACATTAGAGAGGCTTGGATTAGAGAAGCTTTCAACTGATGTCTCGAAATCTAGAGCATCAACGATGGGTCTACGCGTAACGAAGGCTGTGA
GAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACAAGGAAAGAAAAAAAGTTAAGGCTGGATGGGATAGTTAAAACTGTCATCACTCTCAATTGTTAT
AGGTGCTGTGAACCTGCTCCTGAATGCGTTTTCTCAAATTTCTCCATTGTACTAAGCGAAGAACCGATTGAAGAACCTGATGTCATAAATATGGGAATCATTAATGGGCA
GGATATGTTCAAGACGTATGATGGAAATAGTGATGAAGATGATGAAGAGTTGTTTGATTTGGATGATCAACTCTATTTTCCTCTTGTAGAGAAAGAAATAGATATATCAA
AGAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGCAATATGTGATCCGGGATGCAAAGGTATGTGTCTGAATTGTGGTATAAATTTGAATACTGGAAGCTGT
AACTGTAGTAAGCAGGCTGTAAAGAAAAATGATTTTGGTCCTCTTGGAAATTTGAGAAGGCAAATGCAAAAAAATTCTAAGACTTAGAATGCAAG
Protein sequenceShow/hide protein sequence
MSLKPRIEFFCTASPKFLPFSLTQGYSLIQFLCAVFKMSATFPTSSLVSSSHSNEFIKVLYLKSKGNVSFHSHFRVPWKFMRYIQPSLGDPCIKLKSTSIKCVKPTYQSL
FEDDSVITDWVDQEGDIEEMGSPWEGAVIYQRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKAVRDYPFGTPVQISVDVTRKEKKLRLDGIVKTVITLNCY
RCCEPAPECVFSNFSIVLSEEPIEEPDVINMGIINGQDMFKTYDGNSDEDDEELFDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTGSC
NCSKQAVKKNDFGPLGNLRRQMQKNSKT