CuGenDBv2

Gene ID	Clc09G06290
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Nucleolar protein 16
Genome location	ClcChr09:4866806..4868514
RNA-Seq Expression	Clc09G06290
Synteny	Clc09G06290
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008451586.1 PREDICTED: uncharacterized protein LOC103492822 [Cucumis melo]

3.2e-93

91.24

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRK
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL RK
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRK

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

1.6e-92

90.67

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS P S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR
        D VLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL R
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

1.4e-93

91.71

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS P S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL R
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

5.4e-93

91.19

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS P S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRYH  LDKNPLIL R
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

1.7e-99

95.9

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWD+KA VI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQP S+EP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRKK
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLILIRKK
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAV9 Nucleolar protein 16

2.9e-92

89.74

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRKK
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRY+S LD NPLIL RK+
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRKK

A0A1S3BSM4 Nucleolar protein 16

1.5e-93

91.24

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRK
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL RK
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRK

A0A5A7VLA5 Nucleolar protein 16

1.5e-93

91.24

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDPTWDEK SVI NYKSFGVISNPNLLSVRSRTDHIVESDSLQVPP    S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRK
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL RK
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRK

A0A6J1GRW5 Nucleolar protein 16

7.6e-93

90.67

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS P S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR
        D VLDSSGSDVEEDDLKTALGKKR+DGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL R
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR

A0A6J1JMQ4 Nucleolar protein 16

6.9e-94

91.71

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WDEKASVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVPPS P S++P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEP

Query:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR
        D VLDSSGSDVEEDDLKTALGKKRKDGKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHS ATLEKLCKRYHS LDKNPLIL R
Subjt:  DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

1.6e-66

63.08

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS-QPTSNE
        M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGVISNPNLL +R+RTDH+++ DSL VPP  +P +++
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPS-QPTSNE

Query:  P---DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLIL
        P   +F    SGS++EEDDLKTALGK+RKDGKSAPLQPLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHS ATL KLC RY  + DKNP+++
Subjt:  P---DFVLDSSGSDVEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLIL

Sequences

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CDS sequence

Show/hide CDS sequence

atgggaaggtctcgaagaaagtacaagagatctcggccaaaagtcaaggtcggcttgcccaaaagacaccccaatgtcttcaagccatccttctgcatgccgccgaagct
ccgctccttactcgccgaacaatttgaagaggatccaacatgggatgagaaagcaagtgtcattgacaactacaaatccttcggggttatttctaatcctaatttgctca
gtgttcgttcccgcactgatcacatcgttgagagcgactctctccaggttccgccttctcagccgacttccaatgaacctgactttgtgcttgattcttccggtagcgat
gttgaagaggatgatttgaaaacagcattgggaaagaagcgcaaagatgggaaatctgcacctctacaaccgttgaccacgattcagcgtgttcatgtcggtaggctaat
tgagaaatatggagatgattacgagagaatgtttatggatacaaagctgaactcaatgcagcattctgctgccactctggagaaactatgcaaaagatatcacagttttt
tagataagaatccattgatattgattcgtaaaaaatga

mRNA sequence

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gtttggttcggttcggttagttaagttttctaatcaccgaaccggaaaaactcggttcctaatttttttccacaacccctcaggacaaaaaccctacgaaatcccaactg
agctcttcatcttccacatagtaaaaccctagccaccagttttcgccttctccttccaattcacagagccattgagagagatgggaaggtctcgaagaaagtacaagaga
tctcggccaaaagtcaaggtcggcttgcccaaaagacaccccaatgtcttcaagccatccttctgcatgccgccgaagctccgctccttactcgccgaacaatttgaaga
ggatccaacatgggatgagaaagcaagtgtcattgacaactacaaatccttcggggttatttctaatcctaatttgctcagtgttcgttcccgcactgatcacatcgttg
agagcgactctctccaggttccgccttctcagccgacttccaatgaacctgactttgtgcttgattcttccggtagcgatgttgaagaggatgatttgaaaacagcattg
ggaaagaagcgcaaagatgggaaatctgcacctctacaaccgttgaccacgattcagcgtgttcatgtcggtaggctaattgagaaatatggagatgattacgagagaat
gtttatggatacaaagctgaactcaatgcagcattctgctgccactctggagaaactatgcaaaagatatcacagttttttagataagaatccattgatattgattcgta
aaaaatgaatgctccatctttcaaattgttttgtaacaagaggtgaaaacccgttttgatcaatattgtagcaaaaggtatgatcatgaaatcttat

Protein sequence

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MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKASVIDNYKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPTSNEPDFVLDSSGSD
VEEDDLKTALGKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSAATLEKLCKRYHSFLDKNPLILIRKK

Clc09G06290 (gene) of Watermelon (cordophanus) v2 genome