CuGenDBv2

Gene ID	Clc09G06690
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	rRNA-processing protein like
Genome location	ClcChr09:5211403..5214896
RNA-Seq Expression	Clc09G06690
Synteny	Clc09G06690
Gene Ontology terms	NA
InterPro domains	IPR013730 - Fyv7/TAP26

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004136058.2 uncharacterized protein LOC101216293 [Cucumis sativus]

3.0e-80

89.01

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MK+S GK E  NR KS  M N KH N+KR GGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQ NERPSSSTV LVEGENE K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FENQ N RCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

XP_008451439.1 PREDICTED: uncharacterized protein LOC103492733 [Cucumis melo]

7.1e-82

90.05

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MKN  GK E KNR KS  M   KH N+KR GGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQQNERPSSSTVGLVEGENE K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FENQ NGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

XP_022953215.1 uncharacterized protein LOC111455827 [Cucurbita moschata]

1.6e-78

87.89

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MK  TG+DE +NRPKS  MKNKKHKN+KR GGKGLSLEAFAN KSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQN  NERPSSSTVGLVEGEN  K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVN
         ENQ NGR GKERNKG+PSLQ LYERKHEEKEKARMEKEAIIAAKKEEQERAKARRN+TREKM KRTQKGQPVMKYRIEHLL+TIGAS+N
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVN

XP_022960530.1 uncharacterized protein LOC111461241 [Cucurbita moschata]

4.8e-78

86.39

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MKN  GKDE++ R KS  MK  KHKN+KR GGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN QNERPSSS+VGLVEGENEMK
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FEN+ NGR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS+NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

XP_038876713.1 uncharacterized protein LOC120069103 [Benincasa hispida]

1.3e-80

90.1

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MKN TGKDED+NR  S  MK+KKHKN+KR GGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVK+QNQQNERPSSSTVGLVE ENE K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETI-GASVNH
        FEN  NGR GKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRN+TREKMFKRTQKGQPVMKYRIEHLLETI GAS+ H
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETI-GASVNH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7L3 Uncharacterized protein

1.5e-80

89.01

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MK+S GK E  NR KS  M N KH N+KR GGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQ NERPSSSTV LVEGENE K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FENQ N RCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

A0A1S3BRH3 uncharacterized protein LOC103492733

3.5e-82

90.05

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MKN  GK E KNR KS  M   KH N+KR GGK LSLEAFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQNQQNERPSSSTVGLVEGENE K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FENQ NGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

A0A6J1GP14 uncharacterized protein LOC111455827

8.0e-79

87.89

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MK  TG+DE +NRPKS  MKNKKHKN+KR GGKGLSLEAFAN KSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQN  NERPSSSTVGLVEGEN  K
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVN
         ENQ NGR GKERNKG+PSLQ LYERKHEEKEKARMEKEAIIAAKKEEQERAKARRN+TREKM KRTQKGQPVMKYRIEHLL+TIGAS+N
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVN

A0A6J1H9B9 uncharacterized protein LOC111461241

2.3e-78

86.39

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Query:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MKN  GKDE++ R KS  MK  KHKN+KR GGKG S +AFANAKSTTDYYNPALIKKQREFYKNAKHV+KYKKLVKHQN QNERPSSS+VGLVEGENEMK
Subjt:  MKNSTGKDEDKNRPKSN-MKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FEN+ NGR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS+NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

A0A6J1KV89 uncharacterized protein LOC111497895

1.2e-77

85.34

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Query:  MKNSTGKDEDKNRPKSNM-KNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK
        MKN  GKDE++ R KS   K  KHKN+KR GGKG S +AFANAKSTTDYYNPA IKKQREFYKNAKHV+KYKKLVKHQN QNERPS+STVGLVEGENEMK
Subjt:  MKNSTGKDEDKNRPKSNM-KNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMK

Query:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH
        FEN+ NGR G ERNKGVPSLQ LYERKH+EKEKARMEKEAIIAAKKEE+ERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS+NH
Subjt:  FENQMNGRCGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G03180.1 CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).

1.6e-31

45.56

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Query:  DEDKNRPKSNMKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMKFENQMNGR
        D + ++ KS  + KK KN++R GG GLSL+ FAN KS  + YNP+LIKKQ+EFYKNAK+VSK++K +K QN  ++  +  T  + + +++ K + + N R
Subjt:  DEDKNRPKSNMKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMKFENQMNGR

Query:  CGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS
         G         ++ LY++  EE E+ R E+EA+  AKKE +E A++RR   + KM ++T+ GQPVMKYRIEHLLE+I  S
Subjt:  CGKERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGAS

Sequences

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CDS sequence

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ATGAAGAATTCCACTGGAAAAGACGAAGATAAGAATCGCCCTAAGTCGAACATGAAGAACAAGAAACACAAGAACTTGAAACGGTTTGGAGGGAAGGGCCTTTCGCTCGA
GGCGTTCGCGAATGCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAGAGAGTTCTATAAGAATGCTAAACATGTCAGCAAGTATAAGAAGTTAG
TAAAACATCAGAATCAGCAGAATGAGAGGCCTTCTAGCTCTACTGTTGGACTTGTCGAGGGTGAAAATGAAATGAAATTCGAGAATCAGATGAATGGTAGATGTGGGAAA
GAAAGGAACAAAGGTGTACCTAGTCTCCAGGCACTGTATGAGAGAAAGCATGAAGAGAAGGAGAAAGCAAGAATGGAGAAAGAAGCCATTATAGCTGCGAAAAAGGAAGA
ACAAGAAAGGGCTAAAGCTAGACGAAACTCCACGAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATCTTTTGGAAACTA
TTGGAGCCTCAGTGAACCACTGA

mRNA sequence

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TTTAATTTTTGGTGGAATAACGTAAATACAATTTTAATTTTTAAACCATCTCGTCGGATTTTCCTTTGCTTCTCCGTTTTTGACCTAATTCTTCGCAATTTCATTCAACC
TCTCCACAAACAATGAAGAATTCCACTGGAAAAGACGAAGATAAGAATCGCCCTAAGTCGAACATGAAGAACAAGAAACACAAGAACTTGAAACGGTTTGGAGGGAAGGG
CCTTTCGCTCGAGGCGTTCGCGAATGCTAAATCAACTACCGATTACTATAATCCAGCTTTGATAAAAAAGCAAAGAGAGTTCTATAAGAATGCTAAACATGTCAGCAAGT
ATAAGAAGTTAGTAAAACATCAGAATCAGCAGAATGAGAGGCCTTCTAGCTCTACTGTTGGACTTGTCGAGGGTGAAAATGAAATGAAATTCGAGAATCAGATGAATGGT
AGATGTGGGAAAGAAAGGAACAAAGGTGTACCTAGTCTCCAGGCACTGTATGAGAGAAAGCATGAAGAGAAGGAGAAAGCAAGAATGGAGAAAGAAGCCATTATAGCTGC
GAAAAAGGAAGAACAAGAAAGGGCTAAAGCTAGACGAAACTCCACGAGAGAAAAAATGTTCAAAAGGACACAAAAAGGTCAGCCAGTTATGAAGTACAGAATTGAGCATC
TTTTGGAAACTATTGGAGCCTCAGTGAACCACTGATGCTTTTCGGTTTTTTCACTGAACTTTTTAGAAGAATTTTTTGTCACTTTAGGAATGTATACTTCTCTTGTACTT
TTAGTTTGCTTCATTATACAATCAAATGATTCCATTGTATTACAATTTATAATCTAATCTAAATCATCCATATGCTTAATATTATCATATTGCCGTCCATTTGCA

Protein sequence

Show/hide protein sequence

MKNSTGKDEDKNRPKSNMKNKKHKNLKRFGGKGLSLEAFANAKSTTDYYNPALIKKQREFYKNAKHVSKYKKLVKHQNQQNERPSSSTVGLVEGENEMKFENQMNGRCGK
ERNKGVPSLQALYERKHEEKEKARMEKEAIIAAKKEEQERAKARRNSTREKMFKRTQKGQPVMKYRIEHLLETIGASVNH

Clc09G06690 (gene) of Watermelon (cordophanus) v2 genome