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Clc09G06730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G06730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionclassical arabinogalactan protein 26
Genome locationClcChr09:5268729..5269136
RNA-Seq ExpressionClc09G06730
SyntenyClc09G06730
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]2.2e-5388.15Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        M S FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSAAATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]5.0e-5387.41Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        M S FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFSPSPSPSPASDI+PLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSAAATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]1.9e-5286.67Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        M S FSLYIPIFMAYTASI AFSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDA PAPEMPL P
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSAAATLNSGGW W + VALT A+  E+ R
Subjt:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]1.9e-5286.67Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        M S FSLYIPIFMAYTASI  FSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSA ATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]4.6e-5187.59Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFS--PSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL
        M S FSLYIPIFMAYTASIL FS ASYPNY PTLISSISAAPEFS  PSPSPSPASDISPLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDAAPAPEM L
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFS--PSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL

Query:  SPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
         PSQSLPFSAA +LN  GW WPVLVALTTALA EL R
Subjt:  SPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

TrEMBL top hitse value%identityAlignment
A0A0A0K510 Uncharacterized protein4.0e-4885.29Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT-LISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLS
        M S FSLYIPIFMAYTAS+  FSFASYPN FPT LISSISAAPEF  SPSP+PASDISPLFPTPG  TLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLS
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT-LISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLS

Query:  PSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        PSQSLPFS AA LNSGGW   V VALTT L AELRR
Subjt:  PSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

A0A1S3BRG9 classical arabinogalactan protein 265.9e-4477.7Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT----LISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        M S FSLYIPIFMAYTAS   F+FASYPNYFPT    + SSISAAPEFSP+P+PS  SDISPLFPTPG  TLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT----LISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLSPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        PLSP+ S+PFSAAA LNS GW   V +AL TALAAEL R
Subjt:  PLSPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

A0A5A7UQZ3 Classical arabinogalactan protein 265.9e-4477.7Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT----LISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEM
        M S FSLYIPIFMAYTAS   F+FASYPNYFPT    + SSISAAPEFSP+P+PS  SDISPLFPTPG  TLPPSSLPTIPSSPSPPNPDFMD APAPEM
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPT----LISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLSPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        PLSP+ S+PFSAAA LNS GW   V +AL TALAAEL R
Subjt:  PLSPSQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

A0A6J1GPB2 classical arabinogalactan protein 262.4e-5387.41Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        M S FSLYIPIFMAYTASIL FSFASYPN+FP LISSISAAPEFSPSPSPSPASDI+PLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPL P
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSAAATLNSGGW W + VALT A+ AE+ R
Subjt:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

A0A6J1JX46 classical arabinogalactan protein 269.1e-5386.67Show/hide
Query:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP
        M S FSLYIPIFMAYTASI AFSFASYPN+FP LISSISAAPEFSPSPSPSPASDISPLFPTPGG TLPPSSLPTIPSSPSPPNPDFMDA PAPEMPL P
Subjt:  MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSP

Query:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR
        SQSLPFSAAATLNSGGW W + VALT A+  E+ R
Subjt:  SQSLPFSAAATLNSGGWFWPVLVALTTALAAELRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 269.1e-0538.52Show/hide
Query:  IPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSP-------SPSPSPASDISPLFPTPGGVTLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM
        + +F A+T  +L+    +  + F   +S+ISAAP F P       + +P+ + D SPLFPTPG   + PS      +PTIPSS SPPNPD +   P P +
Subjt:  IPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSP-------SPSPSPASDISPLFPTPGGVTLPPSS-----LPTIPSSPSPPNPDFMDAAPAPEM

Query:  PLSPSQS-LPFSAAATLNSGGWFWPVLVALTTALA
         +SP  S LP S++  L S      +LV L   LA
Subjt:  PLSPSQS-LPFSAAATLNSGGWFWPVLVALTTALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTACCCTCATTTCTTC
CATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCGCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGTTACCCTTCCGCCGTCCTCCTTGC
CTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGCTGCT
ACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCACTTTCTCTCTCTATATTCCCATTTTCATGGCCTACACAGCTTCTATTTTGGCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTACCCTCATTTCTTC
CATCTCCGCCGCGCCGGAATTTTCGCCCTCGCCGTCGCCATCACCGGCGTCAGACATTTCTCCGCTCTTTCCGACGCCCGGCGGCGTTACCCTTCCGCCGTCCTCCTTGC
CTACCATTCCCTCCAGTCCCAGCCCTCCAAACCCCGATTTTATGGACGCCGCGCCGGCGCCGGAGATGCCTCTTTCGCCGTCTCAGTCCTTGCCGTTCTCCGCCGCTGCT
ACTCTCAACTCCGGTGGTTGGTTTTGGCCGGTTTTGGTGGCTCTTACGACGGCTCTGGCGGCAGAGCTCCGCCGGTGA
Protein sequenceShow/hide protein sequence
MTSTFSLYIPIFMAYTASILAFSFASYPNYFPTLISSISAAPEFSPSPSPSPASDISPLFPTPGGVTLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSAAA
TLNSGGWFWPVLVALTTALAAELRR