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Clc09G07060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G07060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMicrosomal signal peptidase 12 kDa subunit (SPC12)
Genome locationClcChr09:5614511..5621701
RNA-Seq ExpressionClc09G07060
SyntenyClc09G07060
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006465 - signal peptide processing (biological process)
GO:0045047 - protein targeting to ER (biological process)
GO:0005787 - signal peptidase complex (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR009542 - Signal peptidase complex subunit Spc1/SPCS1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51679.1 hypothetical protein Csa_009252 [Cucumis sativus]2.2e-3575.47Show/hide
Query:  LWTAHRRLQIGLQMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILK
        L+ A     +   MDW GQKLAEQLMQ+MLVAFA+VAF TG+VMGSF++MILVYAG VFLTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+LK
Subjt:  LWTAHRRLQIGLQMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILK

Query:  KKPAKK
        KKPAKK
Subjt:  KKPAKK

XP_004135313.1 probable signal peptidase complex subunit 1 [Cucumis sativus]2.8e-3583.87Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQLMQ+MLVAFA+VAF TG+VMGSF++MILVYAG VFLTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+LKKKPAKK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

XP_008446045.1 PREDICTED: probable signal peptidase complex subunit 1 [Cucumis melo]3.7e-3584.95Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQLMQIMLVAFA+VAF TG+VMGSF+MMILVYAG VFLTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+ KKKPAKK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

XP_023549840.1 probable signal peptidase complex subunit 1 [Cucurbita pepo subsp. pepo]2.0e-3381.72Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQ+MQIMLVAFA+VAF TG+VM SF+MM+LVYAG V LTTLITVPNWPFFN HPL WLD SVA+KYPKPQ QEPV+LKKKP KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

XP_038882954.1 probable signal peptidase complex subunit 1 [Benincasa hispida]5.4e-3482.8Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQLMQIMLVAFA+VAF TG++MGSF+MMILVYAG V LTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+LKKK AKK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

TrEMBL top hitse value%identityAlignment
A0A0A0KS09 Uncharacterized protein1.1e-3575.47Show/hide
Query:  LWTAHRRLQIGLQMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILK
        L+ A     +   MDW GQKLAEQLMQ+MLVAFA+VAF TG+VMGSF++MILVYAG VFLTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+LK
Subjt:  LWTAHRRLQIGLQMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILK

Query:  KKPAKK
        KKPAKK
Subjt:  KKPAKK

A0A1S3BET6 probable signal peptidase complex subunit 11.8e-3584.95Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQLMQIMLVAFA+VAF TG+VMGSF+MMILVYAG VFLTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+ KKKPAKK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

A0A5D3CZV6 Putative signal peptidase complex subunit 11.8e-3584.95Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQLMQIMLVAFA+VAF TG+VMGSF+MMILVYAG VFLTTLITVPNWPFFN HPL WLD S+A+KYPKPQ QEPV+ KKKPAKK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

A0A6J1GX63 probable signal peptidase complex subunit 11.4e-3280.65Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQ+MQIMLVAFA+VAF TG+VM SF+MM+LVYAG V LTTLITVPNWPFFN HPL WLD  VA+KYPKPQ QEPV LKKKP KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

A0A6J1KDF1 probable signal peptidase complex subunit 11.1e-3280.65Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQ+MQIMLVAFA+VAF TG+VM SF+MM+LVYA  V LTTLITVPNWPFFN HPL WLD SVA+KYPKPQ QEPV+LKKKP KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

SwissProt top hitse value%identityAlignment
B0FWK4 Signal peptidase complex subunit 11.2e-0738.75Show/hide
Query:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADKYP
        QMD+ GQKLAEQ+ Q +++  A+V F  G+V   F   + +       + L+T+P WP +  HPL WL   D    DK P
Subjt:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADKYP

Q3T134 Signal peptidase complex subunit 19.0e-0838.75Show/hide
Query:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADKYP
        QMD+ GQKLAEQ+ Q +++  A+V F  G++   F   + +       + L+T+P WP +  HPL WL   D S  DK P
Subjt:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADKYP

Q944J0 Probable signal peptidase complex subunit 14.9e-2260.22Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKL EQLMQI+LV   +VA   G+   SF+ M+L+YAG V LTTL+TVPNWPF+N HPL WLD S A+K+PKP+    V  KKK +KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

Q9D958 Signal peptidase complex subunit 16.9e-0839.74Show/hide
Query:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADK
        QMD+ GQKLAEQ+ Q +++  A+V F  G+V   F   + +       + L+T+P WP +  HPL WL   DL   DK
Subjt:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADK

Q9Y6A9 Signal peptidase complex subunit 11.5e-0738.75Show/hide
Query:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADKYP
        QMD+ GQKLAEQ+ Q +++  A+V F  G+V   F   + +       + L+T+P WP +  HPL WL   + S  DK P
Subjt:  QMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWL---DLSVADKYP

Arabidopsis top hitse value%identityAlignment
AT2G22425.1 Microsomal signal peptidase 12 kDa subunit (SPC12)3.5e-2360.22Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKL EQLMQI+LV   +VA   G+   SF+ M+L+YAG V LTTL+TVPNWPF+N HPL WLD S A+K+PKP+    V  KKK +KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

AT2G22425.2 Microsomal signal peptidase 12 kDa subunit (SPC12)3.5e-2360.22Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKL EQLMQI+LV   +VA   G+   SF+ M+L+YAG V LTTL+TVPNWPF+N HPL WLD S A+K+PKP+    V  KKK +KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK

AT4G40042.1 Microsomal signal peptidase 12 kDa subunit (SPC12)5.4e-2460.22Show/hide
Query:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK
        MDW GQKLAEQLMQI+L+  A+V+F  G+   SF+MM+L+YAG V LTTLIT+PNWP FN H L WLD S A+K+PKPQ       KK  +KK
Subjt:  MDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKKKPAKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATACCGCCGGCTGATCATTCCCCTTTGGACTGCACATCGTCGTCTCCAAATTGGCCTGCAGATGGACTGGGTAGGGCAAAAGCTAGCGGAGCAGCTGATGCAAAT
TATGTTGGTTGCATTTGCCATGGTGGCCTTTTCAACAGGCTTTGTTATGGGATCGTTTCAAATGATGATCTTGGTTTACGCTGGTGCTGTGTTTCTCACCACATTAATCA
CTGTTCCAAATTGGCCTTTCTTCAATCACCACCCGCTCAACTGGTTGGATCTTAGTGTGGCTGACAAATACCCTAAGCCGCAATCGCAGGAGCCCGTGATTTTGAAGAAA
AAACCTGCTAAGAAGGAACTTGTAGAAGCTCAGAAGTTCTGCCAAAAACATAAACCACTATTGAAAATGTTTCCAAGTATTTGTCATCCTGGAACAGTAGCTGCACCAAA
ATACAACTGTATAATCATACCACGAAGTTCCATTTCCACAAGGTCCAACAGTTCAGGATCATCAACAGCGTCAACTTTATTCAAAAAGCACACAAGTGATGGAACACCAA
CCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATACCGCCGGCTGATCATTCCCCTTTGGACTGCACATCGTCGTCTCCAAATTGGCCTGCAGATGGACTGGGTAGGGCAAAAGCTAGCGGAGCAGCTGATGCAAAT
TATGTTGGTTGCATTTGCCATGGTGGCCTTTTCAACAGGCTTTGTTATGGGATCGTTTCAAATGATGATCTTGGTTTACGCTGGTGCTGTGTTTCTCACCACATTAATCA
CTGTTCCAAATTGGCCTTTCTTCAATCACCACCCGCTCAACTGGTTGGATCTTAGTGTGGCTGACAAATACCCTAAGCCGCAATCGCAGGAGCCCGTGATTTTGAAGAAA
AAACCTGCTAAGAAGGAACTTGTAGAAGCTCAGAAGTTCTGCCAAAAACATAAACCACTATTGAAAATGTTTCCAAGTATTTGTCATCCTGGAACAGTAGCTGCACCAAA
ATACAACTGTATAATCATACCACGAAGTTCCATTTCCACAAGGTCCAACAGTTCAGGATCATCAACAGCGTCAACTTTATTCAAAAAGCACACAAGTGATGGAACACCAA
CCTGATTAATGCAATAAAACAAATCTATGGTGCATCAACATTACATCCTGAATTCATATATAAACGAGGCTAAAATCTGCAGAAAACACAATGTGCTCCAAATGAACAAA
TGTACACCTGCCGTGCTAGTAGAATATGCTCCTTTGTCTGAGGCATGGCCCCATCAGGGCCAGACACAACGAGGATACCACCATCCATTTGAGCAGCTCCAGTAATCATG
TTCTGCACCAAGTACCACCATCTTTCACTAATCGTTATAACAACTCAGACAATTAGAAAAAGTAACCAATGGATGTAATTGGTGTGCCATTGGATGTTAACTGACATATT
TTCACTAATCGTTATAAGAACTCAGACAATGAGAAAAAGTAACCAATGGATGTAATTGGTGTGCCATTGGATGTTAACACTGACATATTGTATATCTGTAAATCCGTGTT
ATAAGTTT
Protein sequenceShow/hide protein sequence
MQYRRLIIPLWTAHRRLQIGLQMDWVGQKLAEQLMQIMLVAFAMVAFSTGFVMGSFQMMILVYAGAVFLTTLITVPNWPFFNHHPLNWLDLSVADKYPKPQSQEPVILKK
KPAKKELVEAQKFCQKHKPLLKMFPSICHPGTVAAPKYNCIIIPRSSISTRSNSSGSSTASTLFKKHTSDGTPT