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Clc09G07935 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G07935
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr09:6536525..6537032
RNA-Seq ExpressionClc09G07935
SyntenyClc09G07935
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659250.2 pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X1 [Cucumis sativus]4.0e-0578.38Show/hide
Query:  VMIHTN-VPDSFTYNSLIEGFCLVGDLNSARELFVSI
        VMI +  VPD  TYNSLIEGFC+VGDLNSARELFVS+
Subjt:  VMIHTN-VPDSFTYNSLIEGFCLVGDLNSARELFVSI

XP_011659251.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X2 [Cucumis sativus]4.0e-0578.38Show/hide
Query:  VMIHTN-VPDSFTYNSLIEGFCLVGDLNSARELFVSI
        VMI +  VPD  TYNSLIEGFC+VGDLNSARELFVS+
Subjt:  VMIHTN-VPDSFTYNSLIEGFCLVGDLNSARELFVSI

XP_038874245.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Benincasa hispida]1.2e-0465.85Show/hide
Query:  RVARVMIHT-NVPDSFTYNSLIEGFCLVGDLNSARELFVSI
        ++  VMI   N+PD FTYN+L++GFCLVGDL+SARELF SI
Subjt:  RVARVMIHT-NVPDSFTYNSLIEGFCLVGDLNSARELFVSI

XP_038877920.1 pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Benincasa hispida]9.0e-0572.97Show/hide
Query:  VMIHT-NVPDSFTYNSLIEGFCLVGDLNSARELFVSI
        +M H   +PD FTYNSLIEGFCLVGDLN A ELFVS+
Subjt:  VMIHT-NVPDSFTYNSLIEGFCLVGDLNSARELFVSI

XP_038877921.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 [Benincasa hispida]9.0e-0572.97Show/hide
Query:  VMIHT-NVPDSFTYNSLIEGFCLVGDLNSARELFVSI
        +M H   +PD FTYNSLIEGFCLVGDLN A ELFVS+
Subjt:  VMIHT-NVPDSFTYNSLIEGFCLVGDLNSARELFVSI

TrEMBL top hitse value%identityAlignment
A0A1S4DYL3 pentatricopeptide repeat-containing protein At1g63330-like isoform X37.4e-0581.25Show/hide
Query:  NVPDSFTYNSLIEGFCLVGDLNSARELFVSIL
        +VP+  TYNSLIEGFCLVGDLNSARELF S+L
Subjt:  NVPDSFTYNSLIEGFCLVGDLNSARELFVSIL

A0A5A7TFD7 Pentatricopeptide repeat-containing protein1.3e-0469.44Show/hide
Query:  VMIHTNVPDSFTYNSLIEGFCLVGDLNSARELFVSI
        +M+   VPD FTY SLIEGFCLVGDL+SA+ELF+S+
Subjt:  VMIHTNVPDSFTYNSLIEGFCLVGDLNSARELFVSI

A0A5A7UUW8 Pentatricopeptide repeat-containing protein7.4e-0563.41Show/hide
Query:  RVARVMIHTN-VPDSFTYNSLIEGFCLVGDLNSARELFVSI
        ++  +MI +  VP+ FTYNSL++GFC+VGDLNSARELFVS+
Subjt:  RVARVMIHTN-VPDSFTYNSLIEGFCLVGDLNSARELFVSI

A0A5D3CCW0 Pentatricopeptide repeat-containing protein7.4e-0581.25Show/hide
Query:  NVPDSFTYNSLIEGFCLVGDLNSARELFVSIL
        +VP+  TYNSLIEGFCLVGDLNSARELF S+L
Subjt:  NVPDSFTYNSLIEGFCLVGDLNSARELFVSIL

A0A6J1DSW3 pentatricopeptide repeat-containing protein At1g63330-like5.7e-0574.19Show/hide
Query:  NVPDSFTYNSLIEGFCLVGDLNSARELFVSI
        N PD FTYN+L++GFCLVGDLNSARELF+++
Subjt:  NVPDSFTYNSLIEGFCLVGDLNSARELFVSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.1e-0462.96Show/hide
Query:  VPDSFTYNSLIEGFCLVGDLNSARELF
        V D+ TYN+LI+GFC +G LN A+ELF
Subjt:  VPDSFTYNSLIEGFCLVGDLNSARELF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGAAAGG
TCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTG
CGAGGGAACTCTTTGTTAGTATACTATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGCCCGCCCCAACCCCTTCCATCACCCGTATACTACTTCAATTCACCGATTTCCTTTCAGCACCGGCTTCCAACCTTCTTACAAAATTGCACAATAGGAAAGG
TCATCCAGGCTCAAGAGTTGCTAGAGTGATGATTCACACAAACGTTCCAGATTCGTTTACTTATAATTCACTGATCGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTG
CGAGGGAACTCTTTGTTAGTATACTATATTAA
Protein sequenceShow/hide protein sequence
MEMPAPTPSITRILLQFTDFLSAPASNLLTKLHNRKGHPGSRVARVMIHTNVPDSFTYNSLIEGFCLVGDLNSARELFVSILY