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Clc09G08300 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G08300
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionFanconi anemia group D2 protein
Genome locationClcChr09:6909377..6914426
RNA-Seq ExpressionClc09G08300
SyntenyClc09G08300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014563.1 hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2266.67Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLK--------------------------IFMERNFDALEARISNLESVRNRNSIPS
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSDASFV  LK                          I +ERNFDALEARISNLESVRNR+SIPS
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLK--------------------------IFMERNFDALEARISNLESVRNRNSIPS

Query:  AE
        AE
Subjt:  AE

KGN44712.1 hypothetical protein Csa_016169 [Cucumis sativus]6.2e-2280.26Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE
        MLRTRLFWFS+GFA TAASIS  VWRDLLAYRCALSSDAS       FMER+FDALEARISNLES RNRNS+ SAE
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE

XP_022953273.1 uncharacterized protein LOC111455871 isoform X1 [Cucurbita moschata]4.8e-2276.25Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGSN
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE+ ++
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGSN

XP_022992002.1 uncharacterized protein LOC111488481 isoform X1 [Cucurbita maxima]6.2e-2277.22Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGS
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE+ +
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGS

XP_022992003.1 uncharacterized protein LOC111488481 isoform X2 [Cucurbita maxima]1.8e-2180.26Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE

TrEMBL top hitse value%identityAlignment
A0A0A0K8L3 Uncharacterized protein3.0e-2280.26Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE
        MLRTRLFWFS+GFA TAASIS  VWRDLLAYRCALSSDAS       FMER+FDALEARISNLES RNRNS+ SAE
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE

A0A6J1GMY6 uncharacterized protein LOC111455871 isoform X12.3e-2276.25Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGSN
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE+ ++
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGSN

A0A6J1GP63 uncharacterized protein LOC111455871 isoform X28.7e-2280.26Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE

A0A6J1JNH5 uncharacterized protein LOC111488481 isoform X13.0e-2277.22Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGS
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE+ +
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGS

A0A6J1JXU9 uncharacterized protein LOC111488481 isoform X28.7e-2280.26Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE
        MLRTRLFWFSVGFAAT+ASISQ VWRDLLA+RCALSSD          +ERNFDALEARISNLESVRNR+SIPSAE
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G07568.1 unknown protein4.0e-1148.05Show/hide
Query:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEE
        MLRTRL WF++GF+ T  SI+ +VWRDL A R A+SSD          M+  F ALE R+S LES    N  P+  E
Subjt:  MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGAACTCGATTGTTTTGGTTCAGTGTTGGATTTGCAGCCACAGCTGCTTCCATTTCGCAATTAGTCTGGAGAGATCTATTGGCCTATCGATGTGCTCTTTCATC
TGATGCAAGTTTTGTTTTCACCCTGAAAATTTTCATGGAGCGGAATTTTGACGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCAGTTCGGAACCGGAATTCGATTCCAT
CTGCTGAGGAGGGAAGCAATCTCATGAGGTGTCTTGTAGGTGAAATTTTGTACCAACAGTTATGCAGGATGATACCCCATGTAAAAGATATTTTGATTGCGTGGGTGTGC
ATGATGGGAGTGAATTCAACTTTGCAACTCACAAGGGGGTGGTGCCAGTGGGTCGAGTTGGATCTGATGTTTGTAATTTACCTTCGGTTCAGCATATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGAACTCGATTGTTTTGGTTCAGTGTTGGATTTGCAGCCACAGCTGCTTCCATTTCGCAATTAGTCTGGAGAGATCTATTGGCCTATCGATGTGCTCTTTCATC
TGATGCAAGTTTTGTTTTCACCCTGAAAATTTTCATGGAGCGGAATTTTGACGCCCTGGAAGCTAGAATCTCGAATCTCGAGTCAGTTCGGAACCGGAATTCGATTCCAT
CTGCTGAGGAGGGAAGCAATCTCATGAGGTGTCTTGTAGGTGAAATTTTGTACCAACAGTTATGCAGGATGATACCCCATGTAAAAGATATTTTGATTGCGTGGGTGTGC
ATGATGGGAGTGAATTCAACTTTGCAACTCACAAGGGGGTGGTGCCAGTGGGTCGAGTTGGATCTGATGTTTGTAATTTACCTTCGGTTCAGCATATAG
Protein sequenceShow/hide protein sequence
MLRTRLFWFSVGFAATAASISQLVWRDLLAYRCALSSDASFVFTLKIFMERNFDALEARISNLESVRNRNSIPSAEEGSNLMRCLVGEILYQQLCRMIPHVKDILIAWVC
MMGVNSTLQLTRGWCQWVELDLMFVIYLRFSI