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Clc09G09090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:7824221..7824691
RNA-Seq ExpressionClc09G09090
SyntenyClc09G09090
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143645.1 S-protein homolog 1-like [Momordica charantia]4.2e-4871.68Show/hide
Query:  LQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLR
        L  WH+HVVNGL   TL VHCKSKDDDLG   LVT G EFQWTF++N W TTLYWC L KPNADVSF++FWVE+ H+WL YRC ++NC W AKDDGIYLR
Subjt:  LQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLR

Query:  NNPDGVDEFVHKW
        NNPDGVDE +H+W
Subjt:  NNPDGVDEFVHKW

XP_022959899.1 S-protein homolog 1-like [Cucurbita moschata]1.6e-4761.44Show/hide
Query:  MGSSY--VRNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK
        M S+Y   R++  +  LLGLL   + QP   A G    +P+Q W VHVVN L NATL VHCKSKDDDLG   LV  G+EFQW+FK N+W TTL+WC L K
Subjt:  MGSSY--VRNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK

Query:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
        PNA VSF+AFW+EK HIWL+YRC   NC W A+DDG+YLRNNPD VDE VHKW
Subjt:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

XP_023004728.1 S-protein homolog 1-like [Cucurbita maxima]2.3e-4962.75Show/hide
Query:  MGSSYV--RNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK
        M S+Y+  R++  +  LLGLL   + QP   A G    +P+Q W VHVVN L NATL VHCKSKDDDLG   LV  G+EFQW+FK N+W TTL+WC L K
Subjt:  MGSSYV--RNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK

Query:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
        PNA VSF+AFW+EK HIWL+YRC  +NC W AKDDG+YLRNNPDGVDE VHKW
Subjt:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

XP_023514588.1 S-protein homolog 1-like [Cucurbita pepo subsp. pepo]6.1e-4760.78Show/hide
Query:  MGSSY--VRNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK
        M S+Y   R++  +  LLGLL   + QP   A G    +P+Q W VHVVN L NATL VHCKSKDDDLG   LV  G+EFQW+FK N+W TTL+WC L K
Subjt:  MGSSY--VRNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK

Query:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
        PNA VSF+AFW+EK HIWL+YRC   NC W A++DG+YLRNNPD VDE VHKW
Subjt:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

XP_038896407.1 S-protein homolog 1-like [Benincasa hispida]3.9e-7888.24Show/hide
Query:  MGSSYVRNMVYSVVLLGLLLIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNAD
        MGSSY+R MV S+VLLGL+LIQQP LFAKGD VPLPLQ WHVHVVNGLKNATL VHCKSKDDDLGPQ LV+NGAEFQW+FKINIWRTTLYWCSLHKPNAD
Subjt:  MGSSYVRNMVYSVVLLGLLLIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNAD

Query:  VSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKWGEVR
        VSFDAFWVE++HIWLHYRCMNQNCFW+AKDDGIYLRNNPD VDEFVHKW E R
Subjt:  VSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKWGEVR

TrEMBL top hitse value%identityAlignment
A0A1S3CEQ0 S-protein homolog3.6e-4559.44Show/hide
Query:  YSVVLLGLLLIQQPFLFAKGDT-VPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVE
        Y  + + LLL+    +  +  T VPLPL  WH+HVVNGL+N TL VHCKSKDDDLG  TL T G E QWTFK+N + TTL+WC L KPN  V+F++FWVE
Subjt:  YSVVLLGLLLIQQPFLFAKGDT-VPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVE

Query:  KKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKWGEV
        K H WL  RC ++NC WIAKDDGIYLRNN   VDE VH W ++
Subjt:  KKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKWGEV

A0A6J1CPC6 S-protein homolog2.1e-4871.68Show/hide
Query:  LQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLR
        L  WH+HVVNGL   TL VHCKSKDDDLG   LVT G EFQWTF++N W TTLYWC L KPNADVSF++FWVE+ H+WL YRC ++NC W AKDDGIYLR
Subjt:  LQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLR

Query:  NNPDGVDEFVHKW
        NNPDGVDE +H+W
Subjt:  NNPDGVDEFVHKW

A0A6J1DPJ1 S-protein homolog3.3e-4669.49Show/hide
Query:  VPLPLQTWHVHVVNGL-KNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDD
        +P+PL  W++HVVNGL  NATL VHCKSKDDDLG   L+  G E QWTF+IN W+TTLYWC +HKPNADVSFD+FWVEK HIWL YRC +  C W AKDD
Subjt:  VPLPLQTWHVHVVNGL-KNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDD

Query:  GIYLRNNPDGVDEFVHKW
        GIYLRN P+  DE VHKW
Subjt:  GIYLRNNPDGVDEFVHKW

A0A6J1H9E9 S-protein homolog7.8e-4861.44Show/hide
Query:  MGSSY--VRNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK
        M S+Y   R++  +  LLGLL   + QP   A G    +P+Q W VHVVN L NATL VHCKSKDDDLG   LV  G+EFQW+FK N+W TTL+WC L K
Subjt:  MGSSY--VRNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK

Query:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
        PNA VSF+AFW+EK HIWL+YRC   NC W A+DDG+YLRNNPD VDE VHKW
Subjt:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

A0A6J1L0E8 S-protein homolog1.1e-4962.75Show/hide
Query:  MGSSYV--RNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK
        M S+Y+  R++  +  LLGLL   + QP   A G    +P+Q W VHVVN L NATL VHCKSKDDDLG   LV  G+EFQW+FK N+W TTL+WC L K
Subjt:  MGSSYV--RNMVYSVVLLGLL--LIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK

Query:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
        PNA VSF+AFW+EK HIWL+YRC  +NC W AKDDG+YLRNNPDGVDE VHKW
Subjt:  PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 23.1e-0933.33Show/hide
Query:  VHVVNGLKN-ATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPD
        V + N L N  TLL HCKSKDDDLG +TL   G  + ++F    +  TLY+CS   PN   SFD  + + +      +C +  C W  + +G    N+  
Subjt:  VHVVNGLKN-ATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPD

Query:  GVDEFVHKWGE
           +  + W +
Subjt:  GVDEFVHKWGE

F4JLS0 S-protein homolog 16.0e-2140Show/hide
Query:  DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAK
        D +   +  W V VVNGL    TL +HCKSK+DDLG   L      F W F  N+  +T +WC ++K N  ++ + FW +   + L +RC  +NC W AK
Subjt:  DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAK

Query:  DDGIYLRNNPDGVDEFVHKW
         DG+YL N+  G D    KW
Subjt:  DDGIYLRNNPDGVDEFVHKW

Q2HQ46 S-protein homolog 749.6e-1934.44Show/hide
Query:  SYVRNMVYSVVLLGLLLIQQPFLFAKG----DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPN
        +Y++  + ++    L+L  Q  + A+     D V   +  W V V NGL    TL +HCKSK++DLG   L      F W F  N+  +TL+WC + K +
Subjt:  SYVRNMVYSVVLLGLLLIQQPFLFAKG----DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPN

Query:  ADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
          ++   FW +   + L +RC  +NC W AK+DG+YL N+  G D    KW
Subjt:  ADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

Q9FMQ4 S-protein homolog 31.5e-0829.66Show/hide
Query:  VRNMVYSVVLLGLLLIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFD
        ++  V+ VV+   LLI+  F   K D       +  V + N L +  TL +HCKS DDDLG + L  NG+ + + F+ +I  TTL++C    P     FD
Subjt:  VRNMVYSVVLLGLLLIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFD

Query:  AFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
         +  ++  +  H  C+  NC W     G  + +  D      + W
Subjt:  AFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

Q9LW23 S-protein homolog 222.9e-0737.37Show/hide
Query:  VHVVNGLKN-ATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKP---NADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLR
        + +VN LKN  TL + C SK+D LGP T++ NG +F   F  N++ TT + C+L +    +   SF AF  +   +W           W A++DGIYLR
Subjt:  VHVVNGLKN-ATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKP---NADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLR

Arabidopsis top hitse value%identityAlignment
AT4G10895.1 Plant self-incompatibility protein S1 family7.5e-1133.82Show/hide
Query:  FLFAKGDTVPLPLQTWHVHVVNGL-KNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFK--INIWRTTLYWCSLHKP---NADVSFDAFWVEKKHIWLHYR
        FL  + D++ L  + +++ + N L  N  L+V C+S     G ++       F   FK  + I   TL WC+L K       VSFDAF    K  ++H  
Subjt:  FLFAKGDTVPLPLQTWHVHVVNGL-KNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFK--INIWRTTLYWCSLHKP---NADVSFDAFWVEKKHIWLHYR

Query:  C--MNQN-CFWIAKDDGIYLRNNPDGVDEFVHKWGE
        C  M  N CFW  +DDG++ RNNP G  + ++KW +
Subjt:  C--MNQN-CFWIAKDDGIYLRNNPDGVDEFVHKWGE

AT4G16195.1 Plant self-incompatibility protein S1 family2.2e-1033.33Show/hide
Query:  VHVVNGLKN-ATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPD
        V + N L N  TLL HCKSKDDDLG +TL   G  + ++F    +  TLY+CS   PN   SFD  + + +      +C +  C W  + +G    N+  
Subjt:  VHVVNGLKN-ATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPD

Query:  GVDEFVHKWGE
           +  + W +
Subjt:  GVDEFVHKWGE

AT4G16295.1 S-protein homologue 14.3e-2240Show/hide
Query:  DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAK
        D +   +  W V VVNGL    TL +HCKSK+DDLG   L      F W F  N+  +T +WC ++K N  ++ + FW +   + L +RC  +NC W AK
Subjt:  DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAK

Query:  DDGIYLRNNPDGVDEFVHKW
         DG+YL N+  G D    KW
Subjt:  DDGIYLRNNPDGVDEFVHKW

AT4G29035.1 Plant self-incompatibility protein S1 family6.8e-2034.44Show/hide
Query:  SYVRNMVYSVVLLGLLLIQQPFLFAKG----DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPN
        +Y++  + ++    L+L  Q  + A+     D V   +  W V V NGL    TL +HCKSK++DLG   L      F W F  N+  +TL+WC + K +
Subjt:  SYVRNMVYSVVLLGLLLIQQPFLFAKG----DTVPLPLQTWHVHVVNGLKNA-TLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPN

Query:  ADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW
          ++   FW +   + L +RC  +NC W AK+DG+YL N+  G D    KW
Subjt:  ADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKW

AT5G04350.1 Plant self-incompatibility protein S1 family2.0e-1138.38Show/hide
Query:  NGLKNATLL-VHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK-PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGV
        N L+++ LL VHC+SKDDDLG + ++  G ++++TF  NIW+TT + C + + PN     D  +V  +  W   + +  +C WI ++DGIY   + DGV
Subjt:  NGLKNATLL-VHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHK-PNADVSFDAFWVEKKHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCAAGCTACGTGAGAAATATGGTTTATTCAGTTGTATTATTGGGTTTGCTATTGATTCAACAACCATTCTTGTTTGCAAAAGGAGATACAGTTCCACTACCACT
CCAAACCTGGCATGTTCATGTGGTTAATGGGCTAAAAAATGCCACTCTGCTTGTGCATTGTAAGTCCAAAGATGATGATTTAGGACCTCAAACTCTAGTTACCAATGGAG
CTGAATTTCAATGGACTTTCAAGATCAACATTTGGAGAACCACTTTGTATTGGTGCTCACTACACAAGCCAAATGCTGATGTTTCATTTGATGCATTTTGGGTTGAGAAG
AAACATATTTGGCTACATTATAGGTGCATGAATCAAAACTGCTTTTGGATTGCTAAAGATGACGGAATTTATTTAAGAAACAATCCTGATGGTGTTGATGAGTTTGTTCA
TAAGTGGGGAGAAGTCAGACCTACTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCAAGCTACGTGAGAAATATGGTTTATTCAGTTGTATTATTGGGTTTGCTATTGATTCAACAACCATTCTTGTTTGCAAAAGGAGATACAGTTCCACTACCACT
CCAAACCTGGCATGTTCATGTGGTTAATGGGCTAAAAAATGCCACTCTGCTTGTGCATTGTAAGTCCAAAGATGATGATTTAGGACCTCAAACTCTAGTTACCAATGGAG
CTGAATTTCAATGGACTTTCAAGATCAACATTTGGAGAACCACTTTGTATTGGTGCTCACTACACAAGCCAAATGCTGATGTTTCATTTGATGCATTTTGGGTTGAGAAG
AAACATATTTGGCTACATTATAGGTGCATGAATCAAAACTGCTTTTGGATTGCTAAAGATGACGGAATTTATTTAAGAAACAATCCTGATGGTGTTGATGAGTTTGTTCA
TAAGTGGGGAGAAGTCAGACCTACTATTTGA
Protein sequenceShow/hide protein sequence
MGSSYVRNMVYSVVLLGLLLIQQPFLFAKGDTVPLPLQTWHVHVVNGLKNATLLVHCKSKDDDLGPQTLVTNGAEFQWTFKINIWRTTLYWCSLHKPNADVSFDAFWVEK
KHIWLHYRCMNQNCFWIAKDDGIYLRNNPDGVDEFVHKWGEVRPTI