; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G09330 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09330
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type domain-containing protein
Genome locationClcChr09:8040866..8047695
RNA-Seq ExpressionClc09G09330
SyntenyClc09G09330
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR016654 - U6 snRNA-associated Sm-like protein LSm2
IPR018957 - Zinc finger, C3HC4 RING-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026218.1 nucleolin-like [Cucumis melo var. makuwa]5.3e-15087.61Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEGGRRRITLYDQMLAVSDGRELA GFTLNDVLTIQKRASP+PSPAVRL+GRTLLDIIRDDVGKSPV NRERKSWKFL+DRLRLNLRSQIPPPNS RFPG
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
        F+SAEM PN+EQS E TTT AVSAAPSLRQISRRNSTR    VPPSSEATNSD SPD NNSA  A+ GGGRSLLRPQMSRHNSTR SVERSESFTDLTEP
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV
        AREGTRRLSAALAEERSMSAREAVAAQEAADAEA    A+ EE EEE++AES PAP+RMSLMDLLEETDRQMGFEGS YRIEDEEEEEEEEEE E  +EV
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV

Query:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        TTVC   GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

KAE8646249.1 hypothetical protein Csa_016080 [Cucumis sativus]9.8e-12880.24Show/hide
Query:  MLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNEEQS
        MLAVSDGR+LAGGFTLNDVL IQKRA P+ SPAVRL+GRTLLDIIRDDVGKSPV NRER SWKF +DRLRL++RSQIPP NS RFPG +SAEM  N+E S
Subjt:  MLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNEEQS

Query:  TESTTTRAVSAAPSLRQISRRNSTRLVP---PSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEPAREGTRRLSAALA
         E TTT AVSAAPSLRQISRRNSTRL P   PSSEATNS+ SPD NNSA  A+  GGRSLLRPQMSRHNSTR SVERSESFTDLTEP REGTRRLSAALA
Subjt:  TESTTTRAVSAAPSLRQISRRNSTRLVP---PSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEPAREGTRRLSAALA

Query:  EERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEVTTVCGG---GGTE
        EERSMSAREAV AQEAADAEAT +E EQ   ++E+ AES PAPVRMSLMDLLEETDRQMGFEGS YRIEDE+EEEE E E       TTVCGG   GGTE
Subjt:  EERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEVTTVCGG---GGTE

Query:  RNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
         +CCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  RNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

KAG6575985.1 hypothetical protein SDJN03_26624, partial [Cucurbita argyrosperma subsp. sororia]7.5e-12876.29Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEG RRRITLYDQMLAV DGRE A G TLNDVLTI  RASP+PSPAVRLNGRTLLDIIRDDVG SPV NRERKSWKFL+DRLRLNLRSQI  PNS R P 
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
        FSSAEM PNEE+S+ESTTT A  AAPSLRQISRR+S+RL     P SEA NSDDSP+NNNS+T +  G  RSL +PQMSRH+STR ++ERSESFTDL++P
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAE---SAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESD
        AR+G RRLSAALA ERSMSARE V AQEAADAE TA+E E++E E+E+  E   SA APVRMSLMDLLEETDR+MG EGSRYRIE+EEEEEEEEEEEE  
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAE---SAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESD

Query:  DEVTTVCGGG---GTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
         +VT   GGG   G ER CCVCMVR+KGAAFIPCGHTFCRLCSRELWV+R
Subjt:  DEVTTVCGGG---GTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

XP_008458019.1 PREDICTED: nucleolin-like [Cucumis melo]5.9e-14987.03Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEGGRRRITLYDQMLAVSDGRELA GFTLNDVLTIQKRASP+PSPAVRL+GRTLLDIIRDDVGKSPV NRERKSWKFL+DRLRLNLRSQIPPPNS RFPG
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
        F+SA+M PN+EQS E TTT AVSAAPSLRQISRRNSTR    VPPSSEATNSD SPD NNSA  A+  GGRSLLRPQMSRHNSTR SVERSESFTDLTEP
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV
        AREGTRRLSAALAEERSMSAREAVAAQEAADAEA    A+ EE EEE++AES PAP+RMSLMDLLEETDRQMGFEGS YRIEDEEEEEEEEEE E  +EV
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV

Query:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        TTVC   GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

XP_011659191.1 uncharacterized protein LOC101222466 [Cucumis sativus]9.8e-13680.98Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEGGRRRITLYDQMLAVSDGR+LAGGFTLNDVL IQKRA P+ SPAVRL+GRTLLDIIRDDVGKSPV NRER SWKF +DRLRL++RSQIPP NS RFPG
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVP---PSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
         +SAEM  N+E S E TTT AVSAAPSLRQISRRNSTRL P   PSSEATNS+ SPD NNSA  A+  GGRSLLRPQMSRHNSTR SVERSESFTDLTEP
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVP---PSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV
         REGTRRLSAALAEERSMSAREAV AQEAADAEAT +E EQ   ++E+ AES PAPVRMSLMDLLEETDRQMGFEGS YRIEDE+EEEE E E       
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV

Query:  TTVCGG---GGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        TTVCGG   GGTE +CCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  TTVCGG---GGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

TrEMBL top hitse value%identityAlignment
A0A0A0K6R9 RING-type domain-containing protein4.7e-13680.98Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEGGRRRITLYDQMLAVSDGR+LAGGFTLNDVL IQKRA P+ SPAVRL+GRTLLDIIRDDVGKSPV NRER SWKF +DRLRL++RSQIPP NS RFPG
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVP---PSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
         +SAEM  N+E S E TTT AVSAAPSLRQISRRNSTRL P   PSSEATNS+ SPD NNSA  A+  GGRSLLRPQMSRHNSTR SVERSESFTDLTEP
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVP---PSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV
         REGTRRLSAALAEERSMSAREAV AQEAADAEAT +E EQ   ++E+ AES PAPVRMSLMDLLEETDRQMGFEGS YRIEDE+EEEE E E       
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV

Query:  TTVCGG---GGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        TTVCGG   GGTE +CCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  TTVCGG---GGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

A0A1S3C6E1 nucleolin-like2.9e-14987.03Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEGGRRRITLYDQMLAVSDGRELA GFTLNDVLTIQKRASP+PSPAVRL+GRTLLDIIRDDVGKSPV NRERKSWKFL+DRLRLNLRSQIPPPNS RFPG
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
        F+SA+M PN+EQS E TTT AVSAAPSLRQISRRNSTR    VPPSSEATNSD SPD NNSA  A+  GGRSLLRPQMSRHNSTR SVERSESFTDLTEP
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV
        AREGTRRLSAALAEERSMSAREAVAAQEAADAEA    A+ EE EEE++AES PAP+RMSLMDLLEETDRQMGFEGS YRIEDEEEEEEEEEE E  +EV
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV

Query:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        TTVC   GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

A0A5D3E4J3 Nucleolin-like2.6e-15087.61Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG
        MEGGRRRITLYDQMLAVSDGRELA GFTLNDVLTIQKRASP+PSPAVRL+GRTLLDIIRDDVGKSPV NRERKSWKFL+DRLRLNLRSQIPPPNS RFPG
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPG

Query:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP
        F+SAEM PN+EQS E TTT AVSAAPSLRQISRRNSTR    VPPSSEATNSD SPD NNSA  A+ GGGRSLLRPQMSRHNSTR SVERSESFTDLTEP
Subjt:  FSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEP

Query:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV
        AREGTRRLSAALAEERSMSAREAVAAQEAADAEA    A+ EE EEE++AES PAP+RMSLMDLLEETDRQMGFEGS YRIEDEEEEEEEEEE E  +EV
Subjt:  AREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEV

Query:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        TTVC   GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWV+R
Subjt:  TTVC---GGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

A0A6J1H6Y3 chromo domain-containing protein cec-1-like8.9e-12776.44Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSP-VGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFP
        MEGGRRRITLYDQMLAV DGREL GG TLNDVLT+ KRASP PSP VRLNGRTLLDI+RDDVGKSP VGNRERKSWKFL+DRLRLNLRSQIPPPNS RF 
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSP-VGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFP

Query:  GFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGG---GRSLLRPQMSRHNSTRISVERSESFTD
         FSSAEMT NEE+S ESTT    +A P LRQISRR+STRL   +P S EATNS +SP+NNNS +T A  G    RSLLRPQMSR NSTR S+ERSESFTD
Subjt:  GFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGG---GRSLLRPQMSRHNSTRISVERSESFTD

Query:  LTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEES
        LTEP  EGTR LSAALA ERSMSARE VA QEAADAE TA+E   ++ E +  A    APVRMSLMDLLEETDRQMGFEGSRY+IEDE EEEEEEEEEE 
Subjt:  LTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEES

Query:  DDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        + E      GGG+ER CCVCMVRHKGAAFIPCGHTFCRLCSREL V+R
Subjt:  DDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

A0A6J1KT79 nucleolin-like2.4e-12776.86Show/hide
Query:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSP-VGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFP
        MEGGRRRITLYD+MLAV DGRE+ GG TLNDVLT+ KRASP PSP VRLNGRTLLDI+RDDVGKSP  GNRERKSWKFL+DRLRLNLRSQIPPPNS RF 
Subjt:  MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSP-VGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFP

Query:  GFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGG---GRSLLRPQMSRHNSTRISVERSESFTD
         FSSAEMT NEEQS ESTT    +A P LRQISRRNSTRL   +P S EATNS +SP+NNNS +T A  G    RSLLRPQMSR NSTR S+ERSESFTD
Subjt:  GFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRL---VPPSSEATNSDDSPDNNNSATTAAVGG---GRSLLRPQMSRHNSTRISVERSESFTD

Query:  LTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIED--EEEEEEEEEEE
        LTEP  EGTRRLSAALA ERSMSARE VA QEAADAE TANE   ++ E +  A    APVRMSLMDLLEETDRQMGFEGSRY+IED  EEEEEEEEE+E
Subjt:  LTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIED--EEEEEEEEEEE

Query:  ESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        E +DEV  V  GGG+E+ CCVCMVRHKGAAFIPCGHTFCRLCSREL V+R
Subjt:  ESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm28.0e-2466.67Show/hide
Query:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        +V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHM          LSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm21.3e-1856.82Show/hide
Query:  EAEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        + EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+           SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  EAEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE

Q1H595 Sm-like protein LSM22.7e-3584.44Show/hide
Query:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm22.9e-2159.09Show/hide
Query:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR
        E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M          +SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Subjt:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR

Q9Y333 U6 snRNA-associated Sm-like protein LSm28.0e-2466.67Show/hide
Query:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        +V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHM          LSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein1.9e-3684.44Show/hide
Query:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM          LSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFSFQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

AT3G07120.1 RING/U-box superfamily protein9.4e-3637.22Show/hide
Query:  MLAVSDGRELAGGFTLNDVL----TIQKRASPTPSPAV-------RLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPGFS
        M A+        G +L+ VL     I+  + P+P P         R   +TL DIIR++  K   G+++R +W+  +++LRL  R+     +S   P  +
Subjt:  MLAVSDGRELAGGFTLNDVL----TIQKRASPTPSPAV-------RLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPGFS

Query:  SAEMTPNEEQSTESTTTRAVSAAPSLRQI----------SRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFT
        S  + PN +     T  R+ SA  ++R +                     SS    S  +PD++   +    G      +PQ+SRH+S R   E  E+  
Subjt:  SAEMTPNEEQSTESTTTRAVSAAPSLRQI----------SRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFT

Query:  DLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAE-ATANEAEQEEGEEEED---------AESAPAPVR-MSLMDLLEETDRQMGFEGSRYRIEDE
                  R       EER MSAREAVAAQEAA+AE A A  +E E+ ++EED         + SA  P + MSLMDLLEETDRQMG  GSRY + DE
Subjt:  DLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAE-ATANEAEQEEGEEEED---------AESAPAPVR-MSLMDLLEETDRQMGFEGSRYRIEDE

Query:  EEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        +EE EE+EE+E+++E     GGG  E +CCVCMV+ KGA+F PCGHTFC+LCS+EL   +
Subjt:  EEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

AT3G25030.1 RING/U-box superfamily protein1.2e-1735.23Show/hide
Query:  LKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSR
        + D+ R + +   PPP+       S +  +  E    E   +R  +A  SLR+  R      V  SS +  S D+P  N    +  +G            
Subjt:  LKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSR

Query:  HNSTRISVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYR
         NS  ++ E S         + EG  RL A LAEER++SAR                       EEE  AE    P RMSLM+LLEE + QM F      
Subjt:  HNSTRISVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYR

Query:  IEDEEEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        ++ E EEE              V      E +CCVCMVR KGAAFIPCGHTFCRLCSRELWV R
Subjt:  IEDEEEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

AT3G25030.2 RING/U-box superfamily protein1.2e-1735.23Show/hide
Query:  LKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSR
        + D+ R + +   PPP+       S +  +  E    E   +R  +A  SLR+  R      V  SS +  S D+P  N    +  +G            
Subjt:  LKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNEEQSTESTTTRAVSAAPSLRQISRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSR

Query:  HNSTRISVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYR
         NS  ++ E S         + EG  RL A LAEER++SAR                       EEE  AE    P RMSLM+LLEE + QM F      
Subjt:  HNSTRISVERSESFTDLTEPAREGTRRLSAALAEERSMSAREAVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYR

Query:  IEDEEEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        ++ E EEE              V      E +CCVCMVR KGAAFIPCGHTFCRLCSRELWV R
Subjt:  IEDEEEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVNR

AT4G13100.1 RING/U-box superfamily protein1.0e-1346.56Show/hide
Query:  ERSMSARE-AVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEVTTVCGGGGTERNC
        E + S+R+ + AA+EAA+ E           E EE       P RMSLM+LLE+ D      G  Y +    +E E E  +  D     V   G  E  C
Subjt:  ERSMSARE-AVAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEVTTVCGGGGTERNC

Query:  CVCMVRHKGAAFIPCGHTFCRLCSRELWVNR
        CVCMVR KGAAFIPCGHTFCRLCSRELWV R
Subjt:  CVCMVRHKGAAFIPCGHTFCRLCSRELWVNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGTGGTCGCCGGAGGATTACGCTTTACGATCAGATGTTAGCGGTCAGCGACGGCAGAGAGCTCGCCGGCGGTTTTACACTCAACGACGTTTTGACCATTCAAAA
GAGAGCCTCGCCGACCCCCTCGCCGGCGGTGAGATTAAACGGCCGGACTTTGCTTGATATTATAAGAGACGACGTAGGAAAATCCCCCGTTGGTAATCGAGAGAGGAAAT
CTTGGAAGTTTTTGAAAGATCGTCTGCGTCTGAACCTCAGATCTCAAATTCCGCCGCCGAATTCGTTTCGTTTCCCCGGTTTTTCGTCGGCGGAGATGACGCCAAACGAA
GAACAGTCGACGGAATCGACCACCACTCGCGCCGTCTCCGCCGCCCCATCTCTCCGGCAAATATCACGGCGGAATTCCACGCGGTTGGTGCCGCCATCGTCTGAGGCTAC
AAATTCCGACGACTCTCCAGATAACAACAATTCCGCCACCACAGCCGCTGTCGGAGGTGGCCGGAGCCTCCTCAGGCCGCAAATGTCGCGGCACAACTCGACGAGAATCT
CGGTAGAACGAAGCGAGAGTTTCACGGACTTGACGGAGCCAGCGCGTGAGGGCACGCGCCGCCTCTCTGCTGCGCTGGCGGAGGAAAGATCGATGTCAGCTAGAGAAGCG
GTGGCTGCCCAAGAAGCCGCCGACGCAGAAGCCACCGCCAATGAAGCAGAACAAGAAGAAGGAGAAGAAGAAGAAGATGCAGAATCCGCGCCGGCGCCGGTGAGAATGTC
ACTGATGGATCTGTTAGAAGAGACGGACAGGCAAATGGGGTTCGAAGGGTCAAGATACAGAATAGAAGATGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTG
ACGATGAAGTCACCACCGTATGCGGCGGTGGCGGGACGGAACGGAATTGCTGCGTGTGCATGGTGCGTCATAAAGGGGCGGCATTTATCCCCTGTGGTCACACCTTTTGT
AGGCTCTGTTCAAGAGAGCTTTGGGTCAACCGTATACCCAATTCTTCTCCTTCGTCTCACGTAGCACCCAGCGCGCACTCACACCTTCGACTTCCAGCCACTTGCTACGC
ACGTCCGCCATTCGTCGCCGTTGGGGAGGTTATCATCGGGTTTCTGCCGCCGAACTTCGCTGCAGGTGAAGCAGAGGTGACTGTTGAGTTGAAGAACGACCTAGCAATTA
GAGGAACTCTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGACTAATGGAGTTCAAAATTTCTCA
TTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAACTGTTGCATGATGCCACAAGACGCGA
GGCTCGGGGTGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGTGGTCGCCGGAGGATTACGCTTTACGATCAGATGTTAGCGGTCAGCGACGGCAGAGAGCTCGCCGGCGGTTTTACACTCAACGACGTTTTGACCATTCAAAA
GAGAGCCTCGCCGACCCCCTCGCCGGCGGTGAGATTAAACGGCCGGACTTTGCTTGATATTATAAGAGACGACGTAGGAAAATCCCCCGTTGGTAATCGAGAGAGGAAAT
CTTGGAAGTTTTTGAAAGATCGTCTGCGTCTGAACCTCAGATCTCAAATTCCGCCGCCGAATTCGTTTCGTTTCCCCGGTTTTTCGTCGGCGGAGATGACGCCAAACGAA
GAACAGTCGACGGAATCGACCACCACTCGCGCCGTCTCCGCCGCCCCATCTCTCCGGCAAATATCACGGCGGAATTCCACGCGGTTGGTGCCGCCATCGTCTGAGGCTAC
AAATTCCGACGACTCTCCAGATAACAACAATTCCGCCACCACAGCCGCTGTCGGAGGTGGCCGGAGCCTCCTCAGGCCGCAAATGTCGCGGCACAACTCGACGAGAATCT
CGGTAGAACGAAGCGAGAGTTTCACGGACTTGACGGAGCCAGCGCGTGAGGGCACGCGCCGCCTCTCTGCTGCGCTGGCGGAGGAAAGATCGATGTCAGCTAGAGAAGCG
GTGGCTGCCCAAGAAGCCGCCGACGCAGAAGCCACCGCCAATGAAGCAGAACAAGAAGAAGGAGAAGAAGAAGAAGATGCAGAATCCGCGCCGGCGCCGGTGAGAATGTC
ACTGATGGATCTGTTAGAAGAGACGGACAGGCAAATGGGGTTCGAAGGGTCAAGATACAGAATAGAAGATGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTG
ACGATGAAGTCACCACCGTATGCGGCGGTGGCGGGACGGAACGGAATTGCTGCGTGTGCATGGTGCGTCATAAAGGGGCGGCATTTATCCCCTGTGGTCACACCTTTTGT
AGGCTCTGTTCAAGAGAGCTTTGGGTCAACCGTATACCCAATTCTTCTCCTTCGTCTCACGTAGCACCCAGCGCGCACTCACACCTTCGACTTCCAGCCACTTGCTACGC
ACGTCCGCCATTCGTCGCCGTTGGGGAGGTTATCATCGGGTTTCTGCCGCCGAACTTCGCTGCAGGTGAAGCAGAGGTGACTGTTGAGTTGAAGAACGACCTAGCAATTA
GAGGAACTCTGCATTCTGTAGATCAGTATCTCAACATCAAACTGGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCACATGACTAATGGAGTTCAAAATTTCTCA
TTTCAGCTTTCTGTGAGAAACTGTTTTATCAGGGGATCGGTGGTGAGATATGTTCAACTTCCACCAGATGGTGTTGATATCGAACTGTTGCATGATGCCACAAGACGCGA
GGCTCGGGGTGGCTAA
Protein sequenceShow/hide protein sequence
MEGGRRRITLYDQMLAVSDGRELAGGFTLNDVLTIQKRASPTPSPAVRLNGRTLLDIIRDDVGKSPVGNRERKSWKFLKDRLRLNLRSQIPPPNSFRFPGFSSAEMTPNE
EQSTESTTTRAVSAAPSLRQISRRNSTRLVPPSSEATNSDDSPDNNNSATTAAVGGGRSLLRPQMSRHNSTRISVERSESFTDLTEPAREGTRRLSAALAEERSMSAREA
VAAQEAADAEATANEAEQEEGEEEEDAESAPAPVRMSLMDLLEETDRQMGFEGSRYRIEDEEEEEEEEEEEESDDEVTTVCGGGGTERNCCVCMVRHKGAAFIPCGHTFC
RLCSRELWVNRIPNSSPSSHVAPSAHSHLRLPATCYARPPFVAVGEVIIGFLPPNFAAGEAEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMTNGVQNFS
FQLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG