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Clc09G09360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description4F5 domain-containing protein
Genome locationClcChr09:8057169..8060210
RNA-Seq ExpressionClc09G09360
SyntenyClc09G09360
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007513 - Uncharacterised protein family SERF, N-terminal
IPR040211 - Small EDRK-rich factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KRH07555.1 hypothetical protein GLYMA_16G094600v4, partial [Glycine max]1.2e-1788.52Show/hide
Query:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        RGNQRERDRERAQARAG K+KQP+NDGLTPEQRR+RDAKALQEKTA+KA  AAGGNNAGGG
Subjt:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
XP_006599192.1 putative SERF-like protein [Glycine max]6.3e-1988.89Show/hide
Query:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        MTRGNQRERDRERAQARAG K+KQP+NDGLTPEQRR+RDAKALQEKTA+KA  AAGGNNAGGG
Subjt:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
XP_023547529.1 putative SERF-like protein [Cucurbita pepo subsp. pepo]1.2e-1790.16Show/hide
Query:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        RGNQR+RDRERAQARAG+K+KQPRNDGLTPEQRR+RDAKALQEKTARKA MAAGG NAGGG
Subjt:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
XP_027908201.1 putative SERF-like protein [Vigna unguiculata]6.9e-1885.71Show/hide
Query:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        M+RGNQR+RDRERAQARAG K+KQPRNDGLTPEQRR+RDAKALQEK A+KA  AAGGNNAGGG
Subjt:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
XP_030933153.1 putative SERF-like protein [Quercus lobata]1.2e-1785.71Show/hide
Query:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        MTRGNQRERDRERAQARAG K+KQP+ DGLTPEQRR+RDAKALQEK ARKA  +AGGNNAGGG
Subjt:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
TrEMBL top hitse value%identityAlignment
A0A0B2R3P1 4F5 domain-containing protein (Fragment)5.7e-1888.52Show/hide
Query:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        RGNQRERDRERAQARAG K+KQP+NDGLTPEQRR+RDAKALQEKTA+KA  AAGGNNAGGG
Subjt:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
A0A0R0G092 4F5 domain-containing protein3.0e-1988.89Show/hide
Query:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        MTRGNQRERDRERAQARAG K+KQP+NDGLTPEQRR+RDAKALQEKTA+KA  AAGGNNAGGG
Subjt:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
A0A445GGC4 4F5 domain-containing protein (Fragment)5.7e-1888.52Show/hide
Query:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        RGNQRERDRERAQARAG K+KQP+NDGLTPEQRR+RDAKALQEKTA+KA  AAGGNNAGGG
Subjt:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
A0A6J1GQM6 putative SERF-like protein5.7e-1890.16Show/hide
Query:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        RGNQR+RDRERAQARAG+K+KQPRNDGLTPEQRR+RDAKALQEKTARKA MAAGG NAGGG
Subjt:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
K7MG85 4F5 domain-containing protein5.7e-1888.52Show/hide
Query:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        RGNQRERDRERAQARAG K+KQP+NDGLTPEQRR+RDAKALQEKTA+KA  AAGGNNAGGG
Subjt:  RGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24100.1 Uncharacterised protein family SERF2.2e-1471.43Show/hide
Query:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
        MTRG+QRERDRERA AR G K K  ++DGLTPEQRR+RDAKALQEKTA+KA  AA   ++GGG
Subjt:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGG
AT4G13615.1 Uncharacterised protein family SERF3.2e-1370.49Show/hide
Query:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAG
        MTRG+QRERDRERA ARAG K K   +DGLTPEQRR+RD KALQEK A+KA  AAG ++ G
Subjt:  MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGCGGAAACCAGAGAGAGCGAGATCGAGAAAGGGCTCAAGCGAGGGCTGGAAATAAGTCTAAGCAACCAAGAAACGACGGCTTGACTCCTGAACAGCGACGTCA
AAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGGAAAGCTGAAATGGCTGCCGGAGGAAACAACGCCGGCGGCGGAGTTCCTTCTCTTCATTCTCTCCACTTGACCA
TCAGTAGCAGTTTTGTGGATGGATAG
mRNA sequenceShow/hide mRNA sequence
GGGAATCTGAGGGTTGTTTCTGGAGAGTTCCATTGAGATCGAGTGGCGCATAAACGTTTTAACTTTTCTTCCTTTTATATATCCTTCGCCTTTTCAATTCCCATCGTCAA
CAAATTTCATTCATTTCCTCTCATTTTCTCTTTCAATTTCAACTTCCATTCTTCACTATGACTCGCGGAAACCAGAGAGAGCGAGATCGAGAAAGGGCTCAAGCGAGGGC
TGGAAATAAGTCTAAGCAACCAAGAAACGACGGCTTGACTCCTGAACAGCGACGTCAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGGAAAGCTGAAATGGCTG
CCGGAGGAAACAACGCCGGCGGCGGAGTTCCTTCTCTTCATTCTCTCCACTTGACCATCAGTAGCAGTTTTGTGGATGGATAGTATCGATCTCCTACCGTGGTTCGCCTG
GGTTTAGGTTGACTTTTTTAATCCTGTGGGAATGATATCGCAACAGGGTGGGCAGCATGACAAGAAAGAAGGGTCGAAAATGACGATAGGAAACCAACATTGTCCATCAA
TCTCGCAGGATCAAAAATGACATCCTAAAAAACAACTTGAACATTGACCAAATCACGGTACGAAACCAACATTGTCCATTCTCAACACTACTTGCGTCCAAGAGACTTGT
ACGGGTGGTCAAAGACGGGATGTGAAAGAATTCATTCATGAAATGAAAAATGCAGTTGGTCGAATAACTTTCATTCATGAAATGAAAAATGCACTAAGGTAGTTGGTCGA
ATAAGGGACAAGGAGTACATACCTGGAGATAATGTGAGCAATGTTGATGGCAAAAAAGAGAGGATAATGTGTACAAGACTGAGGAAGGGCAAAGTTTGTAATCATTCGGT
GTGGATGCCATGTATCAATAATCAAATATACCTCAAGTCGGAGTAATTTAATTACCAAATTGGGGGTAACCAAAAACCTGAGTCTAACTATTCATTCCAATCAATTGGGT
TGGTGTTGTGGTAAAAAGGAGATATAATCTCAATAGAAAATTTCACCTACTTAAGAATTAATTTCTTATGAATTTTTTTAACACCTAAATGTTATAGGGTCAGGTGGGTT
ATCTCGTAAGATTAGTTGAGGTGTGCGTTAGCTAGTTAAGACACTCACGGA
Protein sequenceShow/hide protein sequence
MTRGNQRERDRERAQARAGNKSKQPRNDGLTPEQRRQRDAKALQEKTARKAEMAAGGNNAGGGVPSLHSLHLTISSSFVDG