CuGenDBv2

Gene ID	Clc09G09570
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Thylakoid protein sll1769
Genome location	ClcChr09:8255981..8258657
RNA-Seq Expression	Clc09G09570
Synteny	Clc09G09570
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014497.1 putative protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-58

72.19

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS V SSVS S FS+V TK KITH SS SL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFFLGKA AE +TER+EST+GEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE
         IGRLQAE+Q+QI+DFQEEVI+RAKKAK+KA R+AKE QGP+SS     T+EVTSSPTAS+NG+Q S+P++YSETVV +DPP GDEE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

3.1e-66

80.54

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS VTSSVSQSPFSLV+TKPKITHYS PSLL FRSSSTPSNLKFRGISHF+PNG SRF+ARCSSGDGDSRTVLDAFFLGKALAEA+TERIESTIGEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSSTV-----EVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD
        GIGRLQAEQQKQI DFQ+EVIERAKKAK+KAAR++KEVQGPVSS+V     EV SSPT+       S+PD+ SE+VV +DP LG+
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSSTV-----EVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

3.1e-66

79.46

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYSSPSLLPFRSSSTPSNL+FRGISHF+PNGSSR +ARCSSGDGDSRT+LDAFFLGKALAEA+TERIESTIGEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD
        GIG+LQAEQQKQI DFQ+EVIERAKKAK+KAAR AKEVQ PVSS     T+EV+SSPT+       S+PD+ SE+ V +DPPLGD
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD

XP_022953678.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]

4.8e-59

71.66

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS V SSVS S FS+V TK KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFF+GKA AE +TER+EST+GEVL 
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE
         IGRLQAE+Q+QI+DFQEEVI+RAKKAK+KA R+AKE QGP+SS     T+EVTSSPTAS+NG+Q S+P++YSETVV +DPP GDEE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

2.4e-74

86.1

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS VTSSVSQSPFSLV TKPKITHYSS SLL FRSSSTPSNLKFR ISHF+PNGS RF+ARCSSGDGDSRTVLDAFFLGKALAEA+TERIEST+GEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE
        GIGRLQAEQQKQI DFQEEVIERAKKAKDKAAR+AKEVQGPVSS     T+EVTSSPT STN +QLSNPD  SETVV +DPPLGD+E
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

1.5e-66

80.54

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS VTSSVSQSPFSLV+TKPKITHYS PSLL FRSSSTPSNLKFRGISHF+PNG SRF+ARCSSGDGDSRTVLDAFFLGKALAEA+TERIESTIGEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSSTV-----EVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD
        GIGRLQAEQQKQI DFQ+EVIERAKKAK+KAAR++KEVQGPVSS+V     EV SSPT+       S+PD+ SE+VV +DP LG+
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSSTV-----EVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

1.5e-66

79.46

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS +TSSVS SPFSLV TKPKITHYSSPSLLPFRSSSTPSNL+FRGISHF+PNGSSR +ARCSSGDGDSRT+LDAFFLGKALAEA+TERIESTIGEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD
        GIG+LQAEQQKQI DFQ+EVIERAKKAK+KAAR AKEVQ PVSS     T+EV+SSPT+       S+PD+ SE+ V +DPPLGD
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGD

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like

2.3e-59

71.66

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS V SSVS S FS+V TK KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFF+GKA AE +TER+EST+GEVL 
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE
         IGRLQAE+Q+QI+DFQEEVI+RAKKAK+KA R+AKE QGP+SS     T+EVTSSPTAS+NG+Q S+P++YSETVV +DPP GDEE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

5.7e-58

71.12

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        MSS V SSVS S FS++ T+ KITH SSPSL+ FRSSST SNLK      FRPNGS RF+A CSSGDGD+RTVLDAFFLGKA AE +TER+EST+GEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE
         IGRLQAE+Q+QI+DFQEEVIERAKKAK+KA R+AKE QGP+SS     T+EVTSSPT S+NG+Q S+ ++YSETVV +DPP GDEE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-----TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like

8.5e-54

70.37

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Query:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS
        M+S VT SVS S FS++ +KPKITH SS           PSNLKFR IS   P GS RFV RCSSGD DSRTVL+AFFLGKALAEA+TER+ESTIGEVLS
Subjt:  MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLS

Query:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-------TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE
        GIGRLQAEQQKQILDFQEEVIERAKKA++KAAR+AKEVQGP+SS       T+EV SS T STN +QLSNP S S T   +DPPLGDEE
Subjt:  GIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-------TVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

SwissProt top hits

e value

%identity

Alignment

P73628 Thylakoid protein sll1769

5.4e-05

38.89

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Query:  VLDAFFLGKALAEAVTERIESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS
        VL AFFLG+A AE ++E++E  +   LS +G+  AEQ++ +  F  EV  RA     +       V GPVS+
Subjt:  VLDAFFLGKALAEAVTERIESTIGEVLSGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

4.1e-21

43.68

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Query:  SQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKF----------RGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVL
        S S FSL ++      Y+  S   F   ++ SN +F          R  +  R N S++      SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL
Subjt:  SQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKF----------RGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVL

Query:  SGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-TVEVTSSPTASTNGRQLSNPDSYSETVV
        S IG+ QAEQQKQ+ + QEEV+ERAKKAK++AAR   E QG V+S  V +T +P A       S     S+T++
Subjt:  SGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-TVEVTSSPTASTNGRQLSNPDSYSETVV

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

2.9e-22

43.68

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Query:  SQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKF----------RGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVL
        S S FSL ++      Y+  S   F   ++ SN +F          R  +  R N S++      SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL
Subjt:  SQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKF----------RGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVL

Query:  SGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-TVEVTSSPTASTNGRQLSNPDSYSETVV
        S IG+ QAEQQKQ+ + QEEV+ERAKKAK++AAR   E QG V+S  V +T +P A       S     S+T++
Subjt:  SGIGRLQAEQQKQILDFQEEVIERAKKAKDKAARNAKEVQGPVSS-TVEVTSSPTASTNGRQLSNPDSYSETVV

Sequences

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CDS sequence

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ATGAGTAGTGCGGTTACATCTTCAGTTTCCCAATCCCCTTTCTCGCTTGTGTCCACTAAACCAAAAATTACCCATTATTCATCTCCATCTCTCCTTCCATTTCGGTCCTC
TTCAACTCCTTCAAATCTCAAATTTCGAGGAATTTCACATTTCCGACCAAATGGATCTTCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTC
TAGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCGTAACTGAGCGAATCGAGTCAACAATTGGAGAGGTTTTGAGCGGGATTGGTAGGCTGCAAGCTGAACAACAA
AAACAGATTCTTGATTTCCAGGAGGAGGTGATAGAAAGAGCTAAAAAGGCCAAGGATAAAGCAGCACGTAATGCTAAAGAAGTACAAGGCCCCGTTTCCTCTACAGTCGA
AGTTACTTCATCTCCAACCGCTTCGACCAATGGAAGACAACTCTCAAATCCCGACTCATATTCAGAAACTGTTGTGAAACGGGATCCTCCTCTTGGTGACGAAGAGTAG

mRNA sequence

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Protein sequence

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MSSAVTSSVSQSPFSLVSTKPKITHYSSPSLLPFRSSSTPSNLKFRGISHFRPNGSSRFVARCSSGDGDSRTVLDAFFLGKALAEAVTERIESTIGEVLSGIGRLQAEQQ
KQILDFQEEVIERAKKAKDKAARNAKEVQGPVSSTVEVTSSPTASTNGRQLSNPDSYSETVVKRDPPLGDEE

Clc09G09570 (gene) of Watermelon (cordophanus) v2 genome