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Clc09G09770 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09770
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:8437244..8437699
RNA-Seq ExpressionClc09G09770
SyntenyClc09G09770
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646235.1 hypothetical protein Csa_015792, partial [Cucumis sativus]1.2e-6382.31Show/hide
Query:  QNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTL-Q
        Q+ FVGAVLPPA V+KWH+HVIN LS+GKL+ HCKSRDTDIGEQYI+HG+EIQWSFKENV+G+TLFWCFM+ PNGSF+SFEVFWHETQHYWLHYRCTL Q
Subjt:  QNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTL-Q

Query:  GTCFWTAKDDGIYLRNIPDGIEERIHEWKR
        GTC+W AKDDGIYLRNIPD I+E+IHEWK+
Subjt:  GTCFWTAKDDGIYLRNIPDGIEERIHEWKR

XP_022143645.1 S-protein homolog 1-like [Momordica charantia]4.3e-3752Show/hide
Query:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASF
        RS++ ++ L+S +  V+    L   A L  A + KWH+HV+N LS   L VHCKS+D D+G    +  G E QW+F+ N W TTL+WC++KKPN    SF
Subjt:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASF

Query:  EVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKRE
        E FW E  H WL YRCT    C WTAKDDGIYLRN PDG++ERIHEW  E
Subjt:  EVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKRE

XP_022143724.1 S-protein homolog 1-like [Momordica charantia]2.3e-5167.14Show/hide
Query:  VVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHET
        VVL++VL  +   Q  FV A+ P  YVDKWHVHV+N LS+  L  HCKSRDTD+GE  +  GAEIQWSFKENVWGTTLFWCF+KKP GS ASF+VFW E 
Subjt:  VVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHET

Query:  QHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW
         H WLHYRCT  GTC WTAKDDGIY+RNIPD ++E +H+W
Subjt:  QHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW

XP_022148919.1 S-protein homolog 1-like [Momordica charantia]2.5e-3753.33Show/hide
Query:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDK----WHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSF
        R +  L+VL S+L+V        +G  L    V      WH+HV+N LS   L VHCKS+D D+G   +  G EIQWSF ENVWGTTLFWCF++KP G+ 
Subjt:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDK----WHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSF

Query:  ASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW
        ASF+VFW E++H WLH+RC +  TC W AKDDGIYLRN  D I+E IH+W
Subjt:  ASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW

XP_038896414.1 S-protein homolog 1-like [Benincasa hispida]7.7e-7990Show/hide
Query:  MGRSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFAS
        MGR+LSYLVVLMSVL +VVH Q++FVGAVLPPA+VDKWHVHVIN LS+GKL VHCKSRDTDIGEQYI HGAEIQWSFKENVWGTTLFWCF+K PNGSFAS
Subjt:  MGRSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFAS

Query:  FEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKR
        FEVFWHE QHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEE+IHEWKR
Subjt:  FEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKR

TrEMBL top hitse value%identityAlignment
A0A6J1CPC6 S-protein homolog2.1e-3752Show/hide
Query:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASF
        RS++ ++ L+S +  V+    L   A L  A + KWH+HV+N LS   L VHCKS+D D+G    +  G E QW+F+ N W TTL+WC++KKPN    SF
Subjt:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASF

Query:  EVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKRE
        E FW E  H WL YRCT    C WTAKDDGIYLRN PDG++ERIHEW  E
Subjt:  EVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKRE

A0A6J1CQ65 S-protein homolog1.1e-5167.14Show/hide
Query:  VVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHET
        VVL++VL  +   Q  FV A+ P  YVDKWHVHV+N LS+  L  HCKSRDTD+GE  +  GAEIQWSFKENVWGTTLFWCF+KKP GS ASF+VFW E 
Subjt:  VVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHET

Query:  QHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW
         H WLHYRCT  GTC WTAKDDGIY+RNIPD ++E +H+W
Subjt:  QHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW

A0A6J1D5G6 S-protein homolog1.2e-3753.33Show/hide
Query:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDK----WHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSF
        R +  L+VL S+L+V        +G  L    V      WH+HV+N LS   L VHCKS+D D+G   +  G EIQWSF ENVWGTTLFWCF++KP G+ 
Subjt:  RSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDK----WHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSF

Query:  ASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW
        ASF+VFW E++H WLH+RC +  TC W AKDDGIYLRN  D I+E IH+W
Subjt:  ASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEW

A0A6J1H9E9 S-protein homolog1.1e-3555.17Show/hide
Query:  VDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        +  W VHV+N L++  L VHCKS+D D+G    +  G+E QWSFK N+W TTLFWC ++KPN ++ SFE FW E  H WL+YRC   G C WTA+DDG+Y
Subjt:  VDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
        LRN PD ++ER+H+WK
Subjt:  LRNIPDGIEERIHEWK

A0A6J1L0E8 S-protein homolog1.7e-3656.9Show/hide
Query:  VDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        + KW VHV+N L++  L VHCKS+D D+G    +  G+E QWSFK N+W TTLFWC ++KPN ++ SFE FW E  H WL+YRC     C WTAKDDG+Y
Subjt:  VDKWHVHVINELSSGKLLVHCKSRDTDIG-EQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
        LRN PDG++ER+H+WK
Subjt:  LRNIPDGIEERIHEWK

SwissProt top hitse value%identityAlignment
F4JLS0 S-protein homolog 11.2e-1837.93Show/hide
Query:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        + +W V V+N L++G+ L +HCKS++ D+GE  ++      W+F EN+  +T FWC+M K NG   +  VFW +     L +RC  +  C WTAK DG+Y
Subjt:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
        L N   G +    +W+
Subjt:  LRNIPDGIEERIHEWK

P0DN92 S-protein homolog 244.0e-0633.33Show/hide
Query:  VHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        +HCKSRD D+G   +  G    W F  N   +TL++C   +       FE++          YRC     C W A+ DGIY
Subjt:  VHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Q2HQ46 S-protein homolog 744.6e-1837.93Show/hide
Query:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        + +W V V N L++G+ L +HCKS++ D+G+  ++      W+F EN+  +TLFWC+M K +G   + +VFW +     L +RC  +  C WTAK+DG+Y
Subjt:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
        L N   G +    +WK
Subjt:  LRNIPDGIEERIHEWK

Q40975 Self-incompatibility protein S13.7e-0729.59Show/hide
Query:  VHVINELSSGKLL-VHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFM---KKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        V ++N   +G+ + +HC+S+D D+  Q +  G ++ +SF+E+ + TT F+C +   K+    F S++    +        RC+ Q  C W   DDG+Y
Subjt:  VHVINELSSGKLL-VHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFM---KKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Q9LW22 S-protein homolog 211.8e-0934.26Show/hide
Query:  VLPPAYVDKWHVHVINEL---SSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFW
        ++   Y  K  + V NEL   +   L VHCKS++ DIG +Y++ G  + +SFK N WGTT FWC + K       ++ +   T +  +        +  W
Subjt:  VLPPAYVDKWHVHVINEL---SSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFW

Query:  TAKDDGIY
         A+DDGIY
Subjt:  TAKDDGIY

Arabidopsis top hitse value%identityAlignment
AT1G28305.1 Plant self-incompatibility protein S1 family1.2e-1333.62Show/hide
Query:  VHVINELSSGK----LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWC-FMKKPN-GSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        +H+ N+L   +    L V CKS   D+G+ Y+++G   Q+  ++N W TTLFWC F   P+  +   F+V+ ++             GT  WTA++DGIY
Subjt:  VHVINELSSGK----LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWC-FMKKPN-GSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
         R +  G   ++H WK
Subjt:  LRNIPDGIEERIHEWK

AT3G26880.1 Plant self-incompatibility protein S1 family1.2e-1034.26Show/hide
Query:  VLPPAYVDKWHVHVINEL---SSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFW
        ++   Y  K  + V NEL   +   L VHCKS++ DIG +Y++ G  + +SFK N WGTT FWC + K       ++ +   T +  +        +  W
Subjt:  VLPPAYVDKWHVHVINEL---SSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFW

Query:  TAKDDGIY
         A+DDGIY
Subjt:  TAKDDGIY

AT4G16295.1 S-protein homologue 18.6e-2037.93Show/hide
Query:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        + +W V V+N L++G+ L +HCKS++ D+GE  ++      W+F EN+  +T FWC+M K NG   +  VFW +     L +RC  +  C WTAK DG+Y
Subjt:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
        L N   G +    +W+
Subjt:  LRNIPDGIEERIHEWK

AT4G29035.1 Plant self-incompatibility protein S1 family3.3e-1937.93Show/hide
Query:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY
        + +W V V N L++G+ L +HCKS++ D+G+  ++      W+F EN+  +TLFWC+M K +G   + +VFW +     L +RC  +  C WTAK+DG+Y
Subjt:  VDKWHVHVINELSSGK-LLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIY

Query:  LRNIPDGIEERIHEWK
        L N   G +    +WK
Subjt:  LRNIPDGIEERIHEWK

AT5G04350.1 Plant self-incompatibility protein S1 family3.0e-1233.65Show/hide
Query:  NELSSGKLL-VHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMK-----KPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNI
        N+L   KLL VHC+S+D D+GE  ++ G + +++F +N+W TT F C M      K +  F ++E  W +           L+ +C W  ++DGIY    
Subjt:  NELSSGKLL-VHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMK-----KPNGSFASFEVFWHETQHYWLHYRCTLQGTCFWTAKDDGIYLRNI

Query:  PDGI
         DG+
Subjt:  PDGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGAAGTTTGAGTTATTTGGTTGTGTTAATGAGTGTATTATTGGTGGTTGTTCATCACCAAAATTTATTTGTGGGAGCGGTTCTTCCTCCAGCGTACGTCGATAA
ATGGCACGTTCATGTGATTAATGAGCTGAGCAGTGGGAAATTACTTGTGCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATATTGAACATGGTGCTGAGATTC
AATGGAGTTTCAAGGAAAATGTTTGGGGAACAACTTTGTTTTGGTGTTTTATGAAGAAACCAAATGGCAGCTTTGCCTCTTTCGAGGTGTTTTGGCATGAAACTCAGCAT
TATTGGCTTCATTATAGGTGCACTTTACAAGGAACTTGTTTTTGGACTGCTAAAGATGATGGAATTTACTTGAGAAATATTCCTGATGGAATTGAAGAAAGAATTCATGA
ATGGAAGAGGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGAAGTTTGAGTTATTTGGTTGTGTTAATGAGTGTATTATTGGTGGTTGTTCATCACCAAAATTTATTTGTGGGAGCGGTTCTTCCTCCAGCGTACGTCGATAA
ATGGCACGTTCATGTGATTAATGAGCTGAGCAGTGGGAAATTACTTGTGCATTGTAAATCAAGAGATACTGATATTGGAGAACAATATATTGAACATGGTGCTGAGATTC
AATGGAGTTTCAAGGAAAATGTTTGGGGAACAACTTTGTTTTGGTGTTTTATGAAGAAACCAAATGGCAGCTTTGCCTCTTTCGAGGTGTTTTGGCATGAAACTCAGCAT
TATTGGCTTCATTATAGGTGCACTTTACAAGGAACTTGTTTTTGGACTGCTAAAGATGATGGAATTTACTTGAGAAATATTCCTGATGGAATTGAAGAAAGAATTCATGA
ATGGAAGAGGGAATAA
Protein sequenceShow/hide protein sequence
MGRSLSYLVVLMSVLLVVVHHQNLFVGAVLPPAYVDKWHVHVINELSSGKLLVHCKSRDTDIGEQYIEHGAEIQWSFKENVWGTTLFWCFMKKPNGSFASFEVFWHETQH
YWLHYRCTLQGTCFWTAKDDGIYLRNIPDGIEERIHEWKRE