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Clc09G09810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:8460859..8461305
RNA-Seq ExpressionClc09G09810
SyntenyClc09G09810
Gene Ontology termsNA
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067970.1 uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa]6.3e-2950.34Show/hide
Query:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------
        MY EK  L VV+LLV+ AV VVQPCT++PLP P  +IHVVNGLNNETLLVHC SKDDDLG H L  KGEEF WTF                         
Subjt:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------

Query:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI
                               KDD +YLRNNL NVDER+H WNKI
Subjt:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI

KAE8646232.1 hypothetical protein Csa_016625, partial [Cucumis sativus]3.0e-1543.41Show/hide
Query:  VVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF----------------------------------
        V LL+V+ A+ VVQPC ++P+P P   IHVVNGL+NETLLVHC S DDDLG   L V+G EFHWTF                                  
Subjt:  VVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF----------------------------------

Query:  -------------KDDGIYLRNNLTNVDE
                     KDDGIYLRNN  N+DE
Subjt:  -------------KDDGIYLRNNLTNVDE

XP_004139722.1 S-protein homolog 1-like [Cucumis sativus]8.2e-2145.65Show/hide
Query:  VVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF----------------------------------
        V LL+V+ A+ VVQPC ++P+P P   IHVVNGL+NETLLVHC S DDDLG   L V+G EFHWTF                                  
Subjt:  VVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF----------------------------------

Query:  -------------KDDGIYLRNNLTNVDERVHSWNKIA
                     KDDGIYLRNN  N+DERVH+WNK+A
Subjt:  -------------KDDGIYLRNNLTNVDERVHSWNKIA

XP_008461539.1 PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]6.1e-2445.58Show/hide
Query:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------
        MY +   L + LLLV+ AV +VQP T++PLP P   IHVVNGL N+TL VHC SKDDDLG+HTL+ KG+E  WTF                         
Subjt:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------

Query:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI
                               KDDGIYLRNNLTNVDE VH WNK+
Subjt:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI

XP_008462114.1 PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo]3.3e-2247.48Show/hide
Query:  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF--------------------------------
        L VV LLV+ A+ VVQPCT++P+P P   IHVVNGL+NETLLVHC S+DDDLG   L VKG EFHWTF                                
Subjt:  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF--------------------------------

Query:  ---------------KDDGIYLRNNLTNVDERVHSWNKI
                       KDDGIYLRNN  N++ERVH+WNKI
Subjt:  ---------------KDDGIYLRNNLTNVDERVHSWNKI

TrEMBL top hitse value%identityAlignment
A0A1S3CEQ0 S-protein homolog3.0e-2445.58Show/hide
Query:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------
        MY +   L + LLLV+ AV +VQP T++PLP P   IHVVNGL N+TL VHC SKDDDLG+HTL+ KG+E  WTF                         
Subjt:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------

Query:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI
                               KDDGIYLRNNLTNVDE VH WNK+
Subjt:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI

A0A1S3CG89 S-protein homolog1.6e-2247.48Show/hide
Query:  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF--------------------------------
        L VV LLV+ A+ VVQPCT++P+P P   IHVVNGL+NETLLVHC S+DDDLG   L VKG EFHWTF                                
Subjt:  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF--------------------------------

Query:  ---------------KDDGIYLRNNLTNVDERVHSWNKI
                       KDDGIYLRNN  N++ERVH+WNKI
Subjt:  ---------------KDDGIYLRNNLTNVDERVHSWNKI

A0A5A7VL75 S-protein homolog3.1e-2950.34Show/hide
Query:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------
        MY EK  L VV+LLV+ AV VVQPCT++PLP P  +IHVVNGLNNETLLVHC SKDDDLG H L  KGEEF WTF                         
Subjt:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF-------------------------

Query:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI
                               KDD +YLRNNL NVDER+H WNKI
Subjt:  -----------------------KDDGIYLRNNLTNVDERVHSWNKI

A0A6J1CPC6 S-protein homolog1.6e-1437.41Show/hide
Query:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLP---FPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF----------------------
        MY + + +TVV+ LV     V+Q  T+  L     P   IHVVNGL+  TL VHC SKDDDLG H L  +G+EF WTF                      
Subjt:  MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLP---FPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF----------------------

Query:  --------------------------KDDGIYLRNNLTNVDERVHSW
                                  KDDGIYLRNN   VDER+H W
Subjt:  --------------------------KDDGIYLRNNLTNVDERVHSW

A0A6J1IHQ8 S-protein homolog2.1e-1444.25Show/hide
Query:  KPLTVVLLLVVAAVGVVQPCTSIPLPFPTS-QIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF---------------------KDDGIYLR
        K +    L  VA VG   P  ++P P P+   IHVVNGL+   LLVHC SKDDDLG H L   G+++ W F                     KDDGIYLR
Subjt:  KPLTVVLLLVVAAVGVVQPCTSIPLPFPTS-QIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF---------------------KDDGIYLR

Query:  NNLTNVDERVHSW
        N L NVDE +H W
Subjt:  NNLTNVDERVHSW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G06090.1 Plant self-incompatibility protein S1 family2.6e-0436.11Show/hide
Query:  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGL--NNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKD
        L V+L+++  +VG      +    +P +Q+H  N    N + L VHC SKDDDLG HT+  +  E+++ F+D
Subjt:  LTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGL--NNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKD

AT4G16195.1 Plant self-incompatibility protein S1 family4.4e-0435Show/hide
Query:  LTVVLLLVVAAVGVVQPCTSIPLP---------FPTSQ--IHVVNGLNNE-TLLVHCNSKDDDLGSHTLTVKGEEFHWTF
        L ++++ +   +        IP+P         FPTS+  + + N L N+ TLL HC SKDDDLG+ TL   GE + ++F
Subjt:  LTVVLLLVVAAVGVVQPCTSIPLP---------FPTSQ--IHVVNGLNNE-TLLVHCNSKDDDLGSHTLTVKGEEFHWTF

AT4G16295.1 S-protein homologue 11.5e-0444.68Show/hide
Query:  QIHVVNGL-NNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKDDGIY
        Q+ VVNGL   ETL +HC SK+DDLG   L  +   F W F ++ ++
Subjt:  QIHVVNGL-NNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKDDGIY

AT5G04350.1 Plant self-incompatibility protein S1 family2.6e-0446.67Show/hide
Query:  SQIHVVNGLNNETLL-VHCNSKDDDLGSHTLTVKGEEFHWTFKDD
        S++ + N L +  LL VHC SKDDDLG H L + G+++ +TF D+
Subjt:  SQIHVVNGLNNETLL-VHCNSKDDDLGSHTLTVKGEEFHWTFKDD

AT5G06030.1 Plant self-incompatibility protein S1 family7.5e-0450Show/hide
Query:  VNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF
        +   N+  L +HC S+DDDLG H L  KGE F W F
Subjt:  VNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGGAGAAAAGAAGCCTTTGACAGTGGTTCTCTTACTTGTGGTGGCGGCTGTGGGGGTGGTTCAGCCGTGCACATCGATTCCATTGCCATTCCCGACGTCGCAAAT
TCATGTGGTAAATGGGCTGAACAATGAAACCTTATTGGTGCATTGTAACTCTAAAGATGATGATTTGGGAAGTCACACTTTGACTGTCAAAGGAGAGGAATTCCATTGGA
CTTTTAAGGATGATGGAATTTACTTGAGAAACAATCTTACTAATGTTGATGAACGTGTACATTCGTGGAACAAAATTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGGAGAAAAGAAGCCTTTGACAGTGGTTCTCTTACTTGTGGTGGCGGCTGTGGGGGTGGTTCAGCCGTGCACATCGATTCCATTGCCATTCCCGACGTCGCAAAT
TCATGTGGTAAATGGGCTGAACAATGAAACCTTATTGGTGCATTGTAACTCTAAAGATGATGATTTGGGAAGTCACACTTTGACTGTCAAAGGAGAGGAATTCCATTGGA
CTTTTAAGGATGATGGAATTTACTTGAGAAACAATCTTACTAATGTTGATGAACGTGTACATTCGTGGAACAAAATTGCTTGA
Protein sequenceShow/hide protein sequence
MYGEKKPLTVVLLLVVAAVGVVQPCTSIPLPFPTSQIHVVNGLNNETLLVHCNSKDDDLGSHTLTVKGEEFHWTFKDDGIYLRNNLTNVDERVHSWNKIA