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Clc09G09840 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09840
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:8471532..8471984
RNA-Seq ExpressionClc09G09840
SyntenyClc09G09840
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050661.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]1.3e-5771.03Show/hide
Query:  MRRRNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVF
        M  RNVVVL + T  LV  EVS+ + P   PSRY++H+VN LS      HCQSK+DDLGYHHL+NRGDE+QWNF+ N W TTLFWCR+E+PD YVAFE F
Subjt:  MRRRNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVF

Query:  WPEKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWI
        WPE KN WLRDRCG+QG CIWTAKDDGIYLRNMP NVDEFVHKWI
Subjt:  WPEKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWI

XP_022933268.1 S-protein homolog 1-like [Cucurbita moschata]1.5e-5870.07Show/hide
Query:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        +N+VV  + T ALVGA+V RV +P L PSRYYIH+VN LSNLG L HCQSKDDDLGYHHLLN GD++QWNFKVNFW TTLFWC++E PD YV+FE FWPE
Subjt:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
         ++ WLRDRC  G+ G CIWTAKDDGIYLRN   NVDE +HKW   R
Subjt:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

XP_038896423.1 S-protein homolog 1-like [Benincasa hispida]4.2e-6173.1Show/hide
Query:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        RNVVVL + TAALVGA++ R  +P   PSRYY+H+VN LSN   + HCQSKDDDLGYHHL+NRGD++QWNFK NFW TTLFWC++E+P+ YV+FE FWPE
Subjt:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  K-KNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIIT
          KN WLRDRCG+QG CIWTAKDDGIYLRNMPINVDEFVHKW+ T
Subjt:  K-KNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIIT

XP_038896432.1 S-protein homolog 1-like [Benincasa hispida]1.3e-6278.83Show/hide
Query:  VTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRD
        +TAA VGAE S+VVI  LPPSRYYIHIVNRLS LG LAHCQSKDDDLGY H+L  GDEFQWNF+ NFWRTTLFWC +ERPD YV+FEVFWPE+++RWLRD
Subjt:  VTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRD

Query:  RCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
        RCGSQG C+W AKDDGIYLRNM  N DEFVHKWI  R
Subjt:  RCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

XP_038896433.1 S-protein homolog 1-like [Benincasa hispida]1.2e-6070.67Show/hide
Query:  MMRRRNVVVLLVVTAALVGA-EVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFE
        M++ RNV+ L ++TAALVGA ++ R+ +P    SRYYIHIVN LS    + HCQSKDDDLGYHHL+N GD++QWNF VNFW TTLFWC++E+PD YV+FE
Subjt:  MMRRRNVVVLLVVTAALVGA-EVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFE

Query:  VFWPEKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
        VFWPE K+ WLRDRCG+QG CIWTAKDDGIYLRNMP NVDEFVHKWI TR
Subjt:  VFWPEKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

TrEMBL top hitse value%identityAlignment
A0A5A7UAS6 S-protein homolog6.1e-5871.03Show/hide
Query:  MRRRNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVF
        M  RNVVVL + T  LV  EVS+ + P   PSRY++H+VN LS      HCQSK+DDLGYHHL+NRGDE+QWNF+ N W TTLFWCR+E+PD YVAFE F
Subjt:  MRRRNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVF

Query:  WPEKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWI
        WPE KN WLRDRCG+QG CIWTAKDDGIYLRNMP NVDEFVHKWI
Subjt:  WPEKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWI

A0A6J1EZA2 S-protein homolog2.6e-5668.03Show/hide
Query:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        +N+VV  + T ALVGA+V RV +P   PSRYYIH+VN LS LG L HCQSKDDDL YHHLLN GD++QWNFKVNFW TTLFWC++E PD YV+FE FWPE
Subjt:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
         ++ WLRDRC  G+ G CIWTAKDDGIYLRN   NVDE +HKW   R
Subjt:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

A0A6J1F497 S-protein homolog7.2e-5970.07Show/hide
Query:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        +N+VV  + T ALVGA+V RV +P L PSRYYIH+VN LSNLG L HCQSKDDDLGYHHLLN GD++QWNFKVNFW TTLFWC++E PD YV+FE FWPE
Subjt:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
         ++ WLRDRC  G+ G CIWTAKDDGIYLRN   NVDE +HKW   R
Subjt:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

A0A6J1F4G4 S-protein homolog1.8e-5768.71Show/hide
Query:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        +N+VV  + T ALVGA+V RV +P   PSRYYIH+VN LS LG L HCQSKDDDLGYHHLLN GD++QWNFKVNFW TTLFWC++E PD YV+FE FWPE
Subjt:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
         ++ WLRDRC  G+ G CIWTAKDDGIYLRN   NVDE +HKW   R
Subjt:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

A0A6J1FF68 S-protein homolog2.6e-5668.03Show/hide
Query:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        +N+VV  + T ALVGA+V RVV+P   PSRYYIH+VN LS LG L HCQSKDDDLGYH LLN GD++QWNFKVNFW TTL+WC++E P  YV+FE FWPE
Subjt:  RNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR
         ++ WLRDRC  G+ G CIWTAKDDGIYLRN   NVDE +HKWI  R
Subjt:  KKNRWLRDRC--GSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR

SwissProt top hitse value%identityAlignment
F2Q9V4 S-protein homolog 61.5e-0827.78Show/hide
Query:  VVLLVVTAALVGAEVSR---VVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPD-GYVAFEVFWP
        +++ +V  +L+G E  +    V P   P    +   +    LG   HC+S+DDD G+ H+L +G  + W F VNF  +TL++C   +       F+++  
Subjt:  VVLLVVTAALVGAEVSR---VVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPD-GYVAFEVFWP

Query:  EKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWII
         + +     RC +   C W AK+DGIY        +   +KW++
Subjt:  EKKNRWLRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWII

F4JLS0 S-protein homolog 12.7e-1839.69Show/hide
Query:  LVGAEVSR-VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRC
        LVG   +R +++P +  S + + +VN L+   TL  HC+SK+DDLG  +L  R + F WNF  N   +T FWC + + +G++   VFW +     L  RC
Subjt:  LVGAEVSR-VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRC

Query:  GSQGICIWTAKDDGIYLRNMPINVDEFVHKW
        G +  CIWTAK DG+YL N     D    KW
Subjt:  GSQGICIWTAKDDGIYLRNMPINVDEFVHKW

P0DN92 S-protein homolog 246.6e-0931.75Show/hide
Query:  NVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLA-HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        ++ ++ +V  +L+ +E  ++     P   +   +  +  N   L  HC+S+DDDLG+ H+L +G+ F W F VNF  +TL++C   +  G +   VF   
Subjt:  NVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLA-HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRCGSQGICIWTAKDDGIY
        + NR    RC +   C W A+ DGIY
Subjt:  KKNRWLRDRCGSQGICIWTAKDDGIY

Q2HQ46 S-protein homolog 741.7e-1739.34Show/hide
Query:  VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRCGSQGICIWT
        +V+P +  S + + + N L+   TL  HC+SK++DLG  + L   D F WNF  N   +TLFWC + + DG++  +VFW +     L  RC  +  C+WT
Subjt:  VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRCGSQGICIWT

Query:  AKDDGIYLRNMPINVDEFVHKW
        AK+DG+YL N  I  D    KW
Subjt:  AKDDGIYLRNMPINVDEFVHKW

Q9FI83 S-protein homolog 281.1e-0626.98Show/hide
Query:  NVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLA-HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE
        ++ ++ +V  +L+ +E  ++     P   +   +  +  N   LA HC+S+DDDLG+ H+L +G+ F W F VNF  +TL +C   +        + +  
Subjt:  NVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLA-HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPE

Query:  KKNRWLRDRCGSQGICIWTAKDDGIY
         ++ +   RC +   C W A+ DG +
Subjt:  KKNRWLRDRCGSQGICIWTAKDDGIY

Arabidopsis top hitse value%identityAlignment
AT2G24870.1 Plant self-incompatibility protein S1 family1.0e-0936.26Show/hide
Query:  NRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRCGSQGICIWTAKDDGIYL
        N+L  +G    C SKDD  G    +  G   + NF +NFWRTT F C +E+   Y  ++ F   K + ++ +     GI  W A++DGIYL
Subjt:  NRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRCGSQGICIWTAKDDGIYL

AT4G16295.1 S-protein homologue 11.9e-1939.69Show/hide
Query:  LVGAEVSR-VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRC
        LVG   +R +++P +  S + + +VN L+   TL  HC+SK+DDLG  +L  R + F WNF  N   +T FWC + + +G++   VFW +     L  RC
Subjt:  LVGAEVSR-VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRC

Query:  GSQGICIWTAKDDGIYLRNMPINVDEFVHKW
        G +  CIWTAK DG+YL N     D    KW
Subjt:  GSQGICIWTAKDDGIYLRNMPINVDEFVHKW

AT4G29035.1 Plant self-incompatibility protein S1 family1.2e-1839.34Show/hide
Query:  VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRCGSQGICIWT
        +V+P +  S + + + N L+   TL  HC+SK++DLG  + L   D F WNF  N   +TLFWC + + DG++  +VFW +     L  RC  +  C+WT
Subjt:  VVIPSLPPSRYYIHIVNRLSNLGTL-AHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRWLRDRCGSQGICIWT

Query:  AKDDGIYLRNMPINVDEFVHKW
        AK+DG+YL N  I  D    KW
Subjt:  AKDDGIYLRNMPINVDEFVHKW

AT5G04350.1 Plant self-incompatibility protein S1 family4.7e-1033.72Show/hide
Query:  HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDG------YVAFEVFWPEKKNRWLRDRCGSQGICIWTAKDDGIY
        HC+SKDDDLG  H+L  G ++++ F  N W+TT F C++++         +VA+E  W +            +  C W  ++DGIY
Subjt:  HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDG------YVAFEVFWPEKKNRWLRDRCGSQGICIWTAKDDGIY

AT5G06020.1 Plant self-incompatibility protein S1 family1.2e-1038Show/hide
Query:  HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIER-PDGYVAFEVFWPEKKNRWLRD--RCGSQGICIWTAKDDGIY-LRNMPINVDEFVHKWI
        HC+SKDDDLG+ H+   G+ + W F VNF  +TL++C   +  D    F++      +R  RD  RC +   C W AK D +Y   N+P  V  F  KW+
Subjt:  HCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIER-PDGYVAFEVFWPEKKNRWLRD--RCGSQGICIWTAKDDGIY-LRNMPINVDEFVHKWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGAGGAGGAGGAATGTGGTTGTTTTGTTGGTCGTGACGGCAGCTTTGGTCGGGGCTGAGGTTTCGAGGGTGGTGATACCTTCGCTACCGCCTTCGAGGTATTA
CATTCACATTGTAAACAGGCTAAGCAATCTGGGCACACTTGCGCACTGCCAGTCCAAGGACGATGATTTGGGATATCACCATTTGCTTAACCGTGGGGATGAATTCCAAT
GGAACTTTAAGGTCAACTTTTGGAGAACAACCTTGTTTTGGTGCAGAATTGAGAGGCCCGATGGGTATGTCGCTTTTGAAGTTTTTTGGCCTGAGAAAAAGAATCGTTGG
CTCCGCGATAGGTGTGGAAGTCAAGGAATTTGTATTTGGACCGCTAAAGATGATGGAATTTACTTGAGAAACATGCCTATTAATGTTGACGAGTTTGTTCACAAATGGAT
CATTACTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATGAGGAGGAGGAATGTGGTTGTTTTGTTGGTCGTGACGGCAGCTTTGGTCGGGGCTGAGGTTTCGAGGGTGGTGATACCTTCGCTACCGCCTTCGAGGTATTA
CATTCACATTGTAAACAGGCTAAGCAATCTGGGCACACTTGCGCACTGCCAGTCCAAGGACGATGATTTGGGATATCACCATTTGCTTAACCGTGGGGATGAATTCCAAT
GGAACTTTAAGGTCAACTTTTGGAGAACAACCTTGTTTTGGTGCAGAATTGAGAGGCCCGATGGGTATGTCGCTTTTGAAGTTTTTTGGCCTGAGAAAAAGAATCGTTGG
CTCCGCGATAGGTGTGGAAGTCAAGGAATTTGTATTTGGACCGCTAAAGATGATGGAATTTACTTGAGAAACATGCCTATTAATGTTGACGAGTTTGTTCACAAATGGAT
CATTACTAGATAA
Protein sequenceShow/hide protein sequence
MMMRRRNVVVLLVVTAALVGAEVSRVVIPSLPPSRYYIHIVNRLSNLGTLAHCQSKDDDLGYHHLLNRGDEFQWNFKVNFWRTTLFWCRIERPDGYVAFEVFWPEKKNRW
LRDRCGSQGICIWTAKDDGIYLRNMPINVDEFVHKWIITR