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Clc09G09850 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09850
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:8473758..8474204
RNA-Seq ExpressionClc09G09850
SyntenyClc09G09850
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067970.1 uncharacterized protein E6C27_scaffold138G001560 [Cucumis melo var. makuwa]4.6e-6882.99Show/hide
Query:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES
        MYEE   L VV+LLVL ++A+VQ CTAVPLPLP+W IHVVNGLNNETLLVHCKSKDDDLG H L  KGEEFQWTFKVNFFGTTLFWCYLQKPNF+VSFES
Subjt:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES

Query:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI
        FWVEK+HPWLNSRCF  +CIWIAKDD +YLRNN  NVDERIHEWNKI
Subjt:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI

XP_004139722.1 S-protein homolog 1-like [Cucumis sativus]1.6e-5775.52Show/hide
Query:  YLAVV-LLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEK
        +LAVV LL+VL +M +VQ C AVP+P PRWHIHVVNGL+NETLLVHCKS DDDLG   L ++G EF WTF+V+ FG TLFWCYL+KPNF+VSFESFWVEK
Subjt:  YLAVV-LLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEK

Query:  THPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKIA
         H WLNSRC+DKNCIWIAKDDGIYLRNNP N+DER+H WNK+A
Subjt:  THPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKIA

XP_008461539.1 PREDICTED: uncharacterized protein LOC103500111 [Cucumis melo]5.6e-6679.59Show/hide
Query:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES
        MYE+   LA+ LLLVL ++ +VQ  TAVPLPLP+WHIHVVNGL N+TL VHCKSKDDDLGNHTLS KG+E QWTFKVNFFGTTLFWCYL+KPNF V+FES
Subjt:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES

Query:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI
        FWVEKTHPWL SRCFDKNCIWIAKDDGIYLRNN  NVDE +H WNK+
Subjt:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI

XP_008462114.1 PREDICTED: uncharacterized protein LOC103500542 [Cucumis melo]3.0e-5977.3Show/hide
Query:  YLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKT
        +LAVV LLVL +M +VQ CTAVP+P PRWHIHVVNGL+NETLLVHCKS+DDDLG   L +KG EF WTF+V+ FG TLFWCYL+KPNF+VSFESFWVEK 
Subjt:  YLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKT

Query:  HPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI
        H WLNSRC+DKNCIWIAKDDGIYLRNNP N++ER+H WNKI
Subjt:  HPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI

XP_022143645.1 S-protein homolog 1-like [Momordica charantia]2.7e-5267.35Show/hide
Query:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLP---LPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVS
        MY + + + VV+ LV    A++QL TA  L    LP+WHIHVVNGL+  TL VHCKSKDDDLG H L  +G+EFQWTF+VNF+ TTL+WCYL+KPN +VS
Subjt:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLP---LPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVS

Query:  FESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW
        FESFWVE+TH WL  RC DKNCIW AKDDGIYLRNNP  VDERIHEW
Subjt:  FESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW

TrEMBL top hitse value%identityAlignment
A0A1S3CEQ0 S-protein homolog2.7e-6679.59Show/hide
Query:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES
        MYE+   LA+ LLLVL ++ +VQ  TAVPLPLP+WHIHVVNGL N+TL VHCKSKDDDLGNHTLS KG+E QWTFKVNFFGTTLFWCYL+KPNF V+FES
Subjt:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES

Query:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI
        FWVEKTHPWL SRCFDKNCIWIAKDDGIYLRNN  NVDE +H WNK+
Subjt:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI

A0A1S3CG89 S-protein homolog1.4e-5977.3Show/hide
Query:  YLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKT
        +LAVV LLVL +M +VQ CTAVP+P PRWHIHVVNGL+NETLLVHCKS+DDDLG   L +KG EF WTF+V+ FG TLFWCYL+KPNF+VSFESFWVEK 
Subjt:  YLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKT

Query:  HPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI
        H WLNSRC+DKNCIWIAKDDGIYLRNNP N++ER+H WNKI
Subjt:  HPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI

A0A5A7VL75 S-protein homolog2.2e-6882.99Show/hide
Query:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES
        MYEE   L VV+LLVL ++A+VQ CTAVPLPLP+W IHVVNGLNNETLLVHCKSKDDDLG H L  KGEEFQWTFKVNFFGTTLFWCYLQKPNF+VSFES
Subjt:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFES

Query:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI
        FWVEK+HPWLNSRCF  +CIWIAKDD +YLRNN  NVDERIHEWNKI
Subjt:  FWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKI

A0A6J1CPC6 S-protein homolog1.3e-5267.35Show/hide
Query:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLP---LPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVS
        MY + + + VV+ LV    A++QL TA  L    LP+WHIHVVNGL+  TL VHCKSKDDDLG H L  +G+EFQWTF+VNF+ TTL+WCYL+KPN +VS
Subjt:  MYEENKYLAVVLLLVLASMAMVQLCTAVPLP---LPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVS

Query:  FESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW
        FESFWVE+TH WL  RC DKNCIW AKDDGIYLRNNP  VDERIHEW
Subjt:  FESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW

A0A6J1L0E8 S-protein homolog1.3e-4460.27Show/hide
Query:  YEENKYL--AVVLLLVLASMAMVQLCTAVPL-PLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSF
        Y + ++L  A  LL +LAS     L  A+ + P+ +W +HVVN LNN TL VHCKSKDDDLG H L   G EFQW+FK N + TTLFWC L+KPN  VSF
Subjt:  YEENKYL--AVVLLLVLASMAMVQLCTAVPL-PLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSF

Query:  ESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW
        E+FW+EKTH WLN RC+ +NCIW AKDDG+YLRNNP  VDER+H+W
Subjt:  ESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW

SwissProt top hitse value%identityAlignment
F4JLQ5 S-protein homolog 22.2e-1229.68Show/hide
Query:  KYLAVVLLLVLASMAMVQLCTAVPLPLP-------------RWHIHVVNGLNNE-TLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQK
        +YL++ +L++  +  + Q      +P+P             +  + + N L N+ TLL HCKSKDDDLGN TL   GE + ++F   FFG TL++C    
Subjt:  KYLAVVLLLVLASMAMVQLCTAVPLPLP-------------RWHIHVVNGLNNE-TLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQK

Query:  PNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNK
        PN + SF+  + +      +++C    C+W  + +G    N+     +  + WNK
Subjt:  PNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNK

F4JLS0 S-protein homolog 15.7e-2142.98Show/hide
Query:  LPRWHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYL
        +  W + VVNGL   ETL +HCKSK+DDLG   L  +   F W F  N   +T FWCY+ K N +++   FW +     L  RC  KNCIW AK DG+YL
Subjt:  LPRWHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYL

Query:  RNNPANVDERIHEW
         N+ +  D    +W
Subjt:  RNNPANVDERIHEW

P0DN92 S-protein homolog 242.2e-0942.53Show/hide
Query:  NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVS-FESFWVEKTHPWLNSRCFDKNCIWIAKDDGIY
        N+  L +HCKS+DDDLG H L+ KGE F W F VNF  +TL++C   +       FE +   +       RC   NC W A+ DGIY
Subjt:  NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVS-FESFWVEKTHPWLNSRCFDKNCIWIAKDDGIY

Q2HQ46 S-protein homolog 747.0e-1936.24Show/hide
Query:  YEENKYLAVVLLLVLASM--AMVQLCTAVPLPLPR---WHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFN
        Y +   LA+   LVL      + +  T   + +P+   W + V NGL   ETL +HCKSK++DLG+  L    + F W F  N   +TLFWCY+ K + +
Subjt:  YEENKYLAVVLLLVLASM--AMVQLCTAVPLPLPR---WHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFN

Query:  VSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW
        ++ + FW +     L  RC  KNC+W AK+DG+YL N+    D    +W
Subjt:  VSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW

Q9LW22 S-protein homolog 218.5e-0936.84Show/hide
Query:  VNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWLNSRCFDKNCI-WIAKDDGIYLRNN
        +N  N   L VHCKSK++D+G   L I GE   ++FK NF+GTT FWC L K      ++ +     +  +     D +   W+A+DDGIY   +
Subjt:  VNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWLNSRCFDKNCI-WIAKDDGIYLRNN

Arabidopsis top hitse value%identityAlignment
AT4G16195.1 Plant self-incompatibility protein S1 family1.5e-1329.68Show/hide
Query:  KYLAVVLLLVLASMAMVQLCTAVPLPLP-------------RWHIHVVNGLNNE-TLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQK
        +YL++ +L++  +  + Q      +P+P             +  + + N L N+ TLL HCKSKDDDLGN TL   GE + ++F   FFG TL++C    
Subjt:  KYLAVVLLLVLASMAMVQLCTAVPLPLP-------------RWHIHVVNGLNNE-TLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQK

Query:  PNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNK
        PN + SF+  + +      +++C    C+W  + +G    N+     +  + WNK
Subjt:  PNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNK

AT4G16295.1 S-protein homologue 14.0e-2242.98Show/hide
Query:  LPRWHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYL
        +  W + VVNGL   ETL +HCKSK+DDLG   L  +   F W F  N   +T FWCY+ K N +++   FW +     L  RC  KNCIW AK DG+YL
Subjt:  LPRWHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYL

Query:  RNNPANVDERIHEW
         N+ +  D    +W
Subjt:  RNNPANVDERIHEW

AT4G29035.1 Plant self-incompatibility protein S1 family4.9e-2036.24Show/hide
Query:  YEENKYLAVVLLLVLASM--AMVQLCTAVPLPLPR---WHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFN
        Y +   LA+   LVL      + +  T   + +P+   W + V NGL   ETL +HCKSK++DLG+  L    + F W F  N   +TLFWCY+ K + +
Subjt:  YEENKYLAVVLLLVLASM--AMVQLCTAVPLPLPR---WHIHVVNGL-NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFN

Query:  VSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW
        ++ + FW +     L  RC  KNC+W AK+DG+YL N+    D    +W
Subjt:  VSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEW

AT5G04347.1 Plant self-incompatibility protein S1 family5.9e-1336.84Show/hide
Query:  VVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQK-PNF--NVSFESF---WVEKTHPWLNSRCFDKNCIWIAKDDGIYLRN
        V N LNN+ L V C+SKDD+LG+H L + G+  +  F  N +  TLFWC L K P+F  +V+F+++   W     P           +WIA++DGIY   
Subjt:  VVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQK-PNF--NVSFESF---WVEKTHPWLNSRCFDKNCIWIAKDDGIYLRN

Query:  NPANVDERIHEWNK
        +P    ++ ++W K
Subjt:  NPANVDERIHEWNK

AT5G04350.1 Plant self-incompatibility protein S1 family1.3e-1240.22Show/hide
Query:  NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYL-QKPNFN-----VSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIY
        +++ L VHC+SKDDDLG H L I G+++++TF  N + TT F C + Q PNF      V++E+ W         S+  + +C WI ++DGIY
Subjt:  NNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYL-QKPNFN-----VSFESFWVEKTHPWLNSRCFDKNCIWIAKDDGIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAAGAAAATAAGTATTTGGCCGTGGTTCTTTTACTTGTGTTGGCGTCTATGGCAATGGTACAGTTGTGCACGGCGGTTCCACTGCCACTCCCAAGGTGGCACAT
CCATGTGGTCAATGGGTTGAACAATGAAACCCTATTGGTTCATTGTAAGTCTAAAGATGATGATTTGGGAAACCACACTTTGAGTATCAAAGGAGAGGAATTTCAATGGA
CTTTTAAGGTCAACTTTTTTGGAACAACGTTGTTTTGGTGTTACCTACAGAAGCCAAATTTTAATGTCTCGTTTGAATCTTTTTGGGTTGAAAAAACTCACCCTTGGCTC
AATTCTAGGTGTTTTGACAAAAATTGCATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAACAATCCTGCTAATGTCGATGAACGTATACATGAGTGGAACAAAAT
CGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGAAGAAAATAAGTATTTGGCCGTGGTTCTTTTACTTGTGTTGGCGTCTATGGCAATGGTACAGTTGTGCACGGCGGTTCCACTGCCACTCCCAAGGTGGCACAT
CCATGTGGTCAATGGGTTGAACAATGAAACCCTATTGGTTCATTGTAAGTCTAAAGATGATGATTTGGGAAACCACACTTTGAGTATCAAAGGAGAGGAATTTCAATGGA
CTTTTAAGGTCAACTTTTTTGGAACAACGTTGTTTTGGTGTTACCTACAGAAGCCAAATTTTAATGTCTCGTTTGAATCTTTTTGGGTTGAAAAAACTCACCCTTGGCTC
AATTCTAGGTGTTTTGACAAAAATTGCATTTGGATTGCTAAAGATGATGGAATTTACTTGAGAAACAATCCTGCTAATGTCGATGAACGTATACATGAGTGGAACAAAAT
CGCTTGA
Protein sequenceShow/hide protein sequence
MYEENKYLAVVLLLVLASMAMVQLCTAVPLPLPRWHIHVVNGLNNETLLVHCKSKDDDLGNHTLSIKGEEFQWTFKVNFFGTTLFWCYLQKPNFNVSFESFWVEKTHPWL
NSRCFDKNCIWIAKDDGIYLRNNPANVDERIHEWNKIA