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Clc09G09870 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G09870
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:8480493..8487407
RNA-Seq ExpressionClc09G09870
SyntenyClc09G09870
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026247.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]5.2e-2572.15Show/hide
Query:  MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK
        M+S +   VIVL L+    V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDDLGYHHL N GDDYQWNFK+
Subjt:  MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK

XP_008458117.1 PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo]6.4e-2383.33Show/hide
Query:  VEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK
        V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDDLGYHHL N GDDYQWNFK+
Subjt:  VEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK

XP_022933266.1 S-protein homolog 74-like [Cucurbita moschata]1.9e-2271.23Show/hide
Query:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK
        ++ ++V +L+T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHHL+NHGDDYQWNFK
Subjt:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK

XP_038896423.1 S-protein homolog 1-like [Benincasa hispida]1.4e-2578.38Show/hide
Query:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK
        +R V+VLWL TAALV A++ R ++PPP  SRYY+HVVNGLSNADMVVHCQSKDDDLGYHHLVN GDDYQWNFK+
Subjt:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK

XP_038896433.1 S-protein homolog 1-like [Benincasa hispida]2.1e-2682.67Show/hide
Query:  IKLRKVIVLWLITAALVEA-RVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNF
        I+ R V+ LWLITAALV A ++LR+TLPPPAVSRYYIH+VNGLS  DMVVHCQSKDDDLGYHHLVNHGDDYQWNF
Subjt:  IKLRKVIVLWLITAALVEA-RVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNF

TrEMBL top hitse value%identityAlignment
A0A1S3C8C8 S-protein homolog3.1e-2383.33Show/hide
Query:  VEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK
        V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDDLGYHHL N GDDYQWNFK+
Subjt:  VEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK

A0A5A7SNG3 S-protein homolog2.5e-2572.15Show/hide
Query:  MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK
        M+S +   VIVL L+    V+ARVLR+TLPPP+V+RYYIHV+NGLSNAD++VHCQSKDDDLGYHHL N GDDYQWNFK+
Subjt:  MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKK

A0A6J1EYK7 S-protein homolog9.0e-2371.23Show/hide
Query:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK
        ++ ++V +L+T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHHL+NHGDDYQWNFK
Subjt:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK

A0A6J1EZB7 S-protein homolog1.5e-2271.23Show/hide
Query:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK
        ++ ++V +L T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHHL+NHGDDYQWNFK
Subjt:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK

A0A6J1F4F3 S-protein homolog1.5e-2271.23Show/hide
Query:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK
        ++ ++V +L T ALV A+V RV LPPP  SRYYIHVVNGLS   ++VHCQSKDDDLGYHHL+NHGDDYQWNFK
Subjt:  LRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCGATCAAGTTGAGGAAGGTGATAGTTTTGTGGCTCATCACAGCAGCTTTGGTCGAAGCTCGGGTTTTGAGGGTGACGTTACCTCCGCCGGCGGTTTCAAGGTA
TTATATTCACGTGGTAAACGGGCTAAGCAACGCCGATATGGTTGTGCACTGCCAATCGAAGGACGATGATTTGGGGTATCACCATTTAGTTAACCATGGAGATGATTACC
AATGGAATTTTAAGAAATGTGGGACGGTAGTGAATGGTCGAGTTCCTCTGCTTTGTTCTTCGTCGGGGAAATGGAATGTGCTTAGGGATCTGAAGGGAGTTAGGAATTTG
GGGGGAACGAAAACCCTAAAGTCGTGGAAGAGTTCAGGGTCGTTATACGGTTTGGTGATGCAGAGGAAGACGACGACCGCCGATCTCCCTCCATCGGAGAAGAGCTTTAA
GGTTTCTAGGGGATCTTCGGACATGGAAAGTATGAGTTTGACGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTATCGATCAAGTTGAGGAAGGTGATAGTTTTGTGGCTCATCACAGCAGCTTTGGTCGAAGCTCGGGTTTTGAGGGTGACGTTACCTCCGCCGGCGGTTTCAAGGTA
TTATATTCACGTGGTAAACGGGCTAAGCAACGCCGATATGGTTGTGCACTGCCAATCGAAGGACGATGATTTGGGGTATCACCATTTAGTTAACCATGGAGATGATTACC
AATGGAATTTTAAGAAATGTGGGACGGTAGTGAATGGTCGAGTTCCTCTGCTTTGTTCTTCGTCGGGGAAATGGAATGTGCTTAGGGATCTGAAGGGAGTTAGGAATTTG
GGGGGAACGAAAACCCTAAAGTCGTGGAAGAGTTCAGGGTCGTTATACGGTTTGGTGATGCAGAGGAAGACGACGACCGCCGATCTCCCTCCATCGGAGAAGAGCTTTAA
GGTTTCTAGGGGATCTTCGGACATGGAAAGTATGAGTTTGACGATATGA
Protein sequenceShow/hide protein sequence
MVSIKLRKVIVLWLITAALVEARVLRVTLPPPAVSRYYIHVVNGLSNADMVVHCQSKDDDLGYHHLVNHGDDYQWNFKKCGTVVNGRVPLLCSSSGKWNVLRDLKGVRNL
GGTKTLKSWKSSGSLYGLVMQRKTTTADLPPSEKSFKVSRGSSDMESMSLTI