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Clc09G10530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G10530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAnaphase-promoting complex subunit 11
Genome locationClcChr09:9281652..9283743
RNA-Seq ExpressionClc09G10530
SyntenyClc09G10530
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0031145 - anaphase-promoting complex-dependent catabolic process (biological process)
GO:0045842 - positive regulation of mitotic metaphase/anaphase transition (biological process)
GO:0051301 - cell division (biological process)
GO:0005680 - anaphase-promoting complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024991 - Anaphase-promoting complex subunit 11, RING-H2 finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV69476.1 zf-Apc11 domain-containing protein, partial [Cephalotus follicularis]3.1e-4697.56Show/hide
Query:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        SVK RWHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

KAB2630342.1 ring finger [Pyrus ussuriensis x Pyrus communis]2.4e-4696.34Show/hide
Query:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        SV Y+WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

KGN44481.1 hypothetical protein Csa_016037 [Cucumis sativus]1.2e-5059.66Show/hide
Query:  QMGPDYPMKECLFI--IATERNFLYSLRLIWVDFL-------SYAFVSLFSCHSRPNIIRPFQLYSCQYDSSIFLDSDSLRKLCSGFKKNIFIPSVKYRW
        QMGPDYPMKE   +       + +++L    V+ L        ++ +SL  C+  P           Q    IFLD D+LRK   G  K          W
Subjt:  QMGPDYPMKECLFI--IATERNFLYSLRLIWVDFL-------SYAFVSLFSCHSRPNIIRPFQLYSCQYDSSIFLDSDSLRKLCSGFKKNIFIPSVKYRW

Query:  HAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        HAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  HAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

KYP42684.1 Anaphase-promoting complex subunit 11, partial [Cajanus cajan]1.1e-4694.12Show/hide
Query:  FIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        F   VKYRWHAV+SWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  FIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

XP_022143644.1 uncharacterized protein LOC111013505 [Momordica charantia]9.1e-4684Show/hide
Query:  KLCSGF-----KKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        K C GF      KNI   + +  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  KLCSGF-----KKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

TrEMBL top hitse value%identityAlignment
A0A0A0K9J6 Anaphase-promoting complex subunit 115.9e-5159.66Show/hide
Query:  QMGPDYPMKECLFI--IATERNFLYSLRLIWVDFL-------SYAFVSLFSCHSRPNIIRPFQLYSCQYDSSIFLDSDSLRKLCSGFKKNIFIPSVKYRW
        QMGPDYPMKE   +       + +++L    V+ L        ++ +SL  C+  P           Q    IFLD D+LRK   G  K          W
Subjt:  QMGPDYPMKECLFI--IATERNFLYSLRLIWVDFL-------SYAFVSLFSCHSRPNIIRPFQLYSCQYDSSIFLDSDSLRKLCSGFKKNIFIPSVKYRW

Query:  HAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        HAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  HAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

A0A151RJC8 Anaphase-promoting complex subunit 11 (Fragment)5.2e-4794.12Show/hide
Query:  FIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        F   VKYRWHAV+SWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  FIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

A0A1Q3BN88 Anaphase-promoting complex subunit 11 (Fragment)1.5e-4697.56Show/hide
Query:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        SVK RWHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

A0A5N5HW07 Anaphase-promoting complex subunit 111.2e-4696.34Show/hide
Query:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        SV Y+WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  SVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

A0A6J1CPX8 Anaphase-promoting complex subunit 114.4e-4684Show/hide
Query:  KLCSGF-----KKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
        K C GF      KNI   + +  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG
Subjt:  KLCSGF-----KKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG

SwissProt top hitse value%identityAlignment
Q3ZCF6 Anaphase-promoting complex subunit 115.2e-3672.37Show/hide
Query:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q  Q HCPMCR+EW+FK
Subjt:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

Q5R8A2 Anaphase-promoting complex subunit 112.0e-3571.05Show/hide
Query:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q  Q HCPMCR+EW+FK
Subjt:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

Q9CPX9 Anaphase-promoting complex subunit 115.2e-3672.37Show/hide
Query:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+N+Q  Q HCPMCR+EW+FK
Subjt:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

Q9M9L0 Anaphase-promoting complex subunit 111.5e-4697.4Show/hide
Query:  RWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        +WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
Subjt:  RWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

Q9NYG5 Anaphase-promoting complex subunit 112.0e-3571.05Show/hide
Query:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        W+ VA+W W A DE CGICRMAF+GCCPDCK+PGDDCPL+WG C+H FH+HCILKW+++Q  Q HCPMCR+EW+FK
Subjt:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

Arabidopsis top hitse value%identityAlignment
AT3G05870.1 anaphase-promoting complex/cyclosome 111.4e-4798.68Show/hide
Query:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
Subjt:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

AT3G05870.2 anaphase-promoting complex/cyclosome 111.4e-4798.68Show/hide
Query:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        WHAVASWTW+AQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
Subjt:  WHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

AT3G42830.1 RING/U-box superfamily protein2.6e-1434.23Show/hide
Query:  DSSIFLDSDSLRKLCSGFKKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDC-----KLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAH
        +S + +   S   + S   KN     +K +W AVA W W+   + C ICR      C +C         ++C + WG CNHAFH HCI +W+  +T Q  
Subjt:  DSSIFLDSDSLRKLCSGFKKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDC-----KLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAH

Query:  CPMCRREWQFK
        CP+   EW+F+
Subjt:  CPMCRREWQFK

AT5G20570.1 RING-box 11.2e-1439.02Show/hide
Query:  RWHAVASWTWNAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK
        +W AVA W W+   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+  +T Q  CP+   EW+F+
Subjt:  RWHAVASWTWNAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFK

AT5G26640.1 BEST Arabidopsis thaliana protein match is: anaphase-promoting complex/cyclosome 11 (TAIR:AT3G05870.2)7.0e-1281.25Show/hide
Query:  TWNAQDETCGICRMAFDGCCPDCKLPGDDCPL
        TW+AQDETCG+CRM FD  CPDCKLP DDCPL
Subjt:  TWNAQDETCGICRMAFDGCCPDCKLPGDDCPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGGTTTACAAAACAAGATCCTCAGGATGACAGTGATCTTAAGAACAGATTTTCTAGTGACAAAAAATGGTGGTTGGCTTGCTCTTGCCAACCTCAAAGTTTGGC
ATATAGTTCTGATCACCAAATGGGTCCGGATTACCCCATGAAAGAATGTCTTTTTATTATTGCCACTGAGAGGAATTTTCTGTATTCTCTTCGACTTATTTGGGTCGACT
TCTTGTCATATGCTTTTGTATCTCTTTTCTCTTGTCATTCTCGACCAAATATAATACGACCATTCCAATTATATTCCTGTCAGTATGATAGTTCTATTTTCCTTGACTCG
GATTCCCTCCGTAAACTATGTTCGGGGTTCAAAAAGAATATTTTCATCCCTTCCGTAAAATATAGGTGGCATGCTGTTGCATCATGGACTTGGAATGCCCAAGATGAAAC
TTGTGGAATCTGTAGGATGGCCTTTGATGGTTGTTGCCCTGATTGCAAGCTCCCTGGGGATGATTGCCCATTGATTTGGGGTGCATGCAACCATGCTTTCCATCTTCATT
GCATCCTAAAATGGGTGAATTCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGGTTTACAAAACAAGATCCTCAGGATGACAGTGATCTTAAGAACAGATTTTCTAGTGACAAAAAATGGTGGTTGGCTTGCTCTTGCCAACCTCAAAGTTTGGC
ATATAGTTCTGATCACCAAATGGGTCCGGATTACCCCATGAAAGAATGTCTTTTTATTATTGCCACTGAGAGGAATTTTCTGTATTCTCTTCGACTTATTTGGGTCGACT
TCTTGTCATATGCTTTTGTATCTCTTTTCTCTTGTCATTCTCGACCAAATATAATACGACCATTCCAATTATATTCCTGTCAGTATGATAGTTCTATTTTCCTTGACTCG
GATTCCCTCCGTAAACTATGTTCGGGGTTCAAAAAGAATATTTTCATCCCTTCCGTAAAATATAGGTGGCATGCTGTTGCATCATGGACTTGGAATGCCCAAGATGAAAC
TTGTGGAATCTGTAGGATGGCCTTTGATGGTTGTTGCCCTGATTGCAAGCTCCCTGGGGATGATTGCCCATTGATTTGGGGTGCATGCAACCATGCTTTCCATCTTCATT
GCATCCTAAAATGGGTGAATTCACAGACTTCTCAGGCTCATTGCCCCATGTGCCGCAGAGAATGGCAATTCAAGGGATGA
Protein sequenceShow/hide protein sequence
MEGFTKQDPQDDSDLKNRFSSDKKWWLACSCQPQSLAYSSDHQMGPDYPMKECLFIIATERNFLYSLRLIWVDFLSYAFVSLFSCHSRPNIIRPFQLYSCQYDSSIFLDS
DSLRKLCSGFKKNIFIPSVKYRWHAVASWTWNAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG