CuGenDBv2

Gene ID	Clc09G10890
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	ClcChr09:9645289..9645516
RNA-Seq Expression	Clc09G10890
Synteny	Clc09G10890
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR001469 - ATP synthase, F1 complex, delta/epsilon subunit IPR020547 - ATP synthase delta/epsilon subunit, C-terminal domain

Homology

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GenBank top hits

e value

%identity

Alignment

ALO22128.1 AtpE [Cucurbita ficifolia]

4.0e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

ASY96329.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]

4.0e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

MBC9853674.1 hypothetical protein [Adiantum capillus-veneris]

4.0e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

YP_004841789.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo]

4.0e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

YP_009752081.1 CF1 subunit epsilon [Dendrosicyos socotranus]

4.0e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU14 ATP synthase epsilon chain, chloroplastic

1.9e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

A0A1X9Q1L0 ATP synthase epsilon chain, chloroplastic

1.9e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

A0A218KG49 ATP synthase epsilon chain, chloroplastic

1.9e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

A0A249RZA2 ATP synthase epsilon chain, chloroplastic

1.9e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

G3ETZ1 ATP synthase epsilon chain, chloroplastic

1.9e-28

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

SwissProt top hits

e value

%identity

Alignment

A0ZZ41 ATP synthase epsilon chain, chloroplastic

2.1e-27

86.3

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQ LEIAEANLRKA+GKRQ IEAN ALR+ARTRVEAIN +
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV

Q2L911 ATP synthase epsilon chain, chloroplastic

2.1e-27

86.3

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQ LEIAEANLRKA+GKRQ IEAN ALR+ARTRVEAIN +
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV

Q49KZ2 ATP synthase epsilon chain, chloroplastic

2.1e-27

84.93

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQ+TLE+AEANLRKA+GKRQ IEAN ALR+ARTRVEAIN +
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV

Q4VZG9 ATP synthase epsilon chain, chloroplastic

5.2e-31

94.67

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNEVTILVND EKASDIDPQEAQQTLEIAEANLRKAQGKRQ IEAN ALR+ARTRVEAINGVPS
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

Q70XZ7 ATP synthase epsilon chain, chloroplastic

2.7e-27

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQTLEIAEANL +A+GKRQ IEAN ALR+ARTRVEAIN + S
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

1.9e-28

86.3

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Query:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV
        MALMGGFARIGNNE+TILVND EK SDIDPQEAQQTLEIAEANLRKA+GKRQ IEAN ALR+ARTRVEA+N +
Subjt:  MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGV

Sequences

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CDS sequence

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ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGGGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAACAAACTCT
TGAAATAGCGGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAGCAATCGAGGCAAATTTCGCTCTCAGGCAAGCTAGGACACGAGTAGAGGCTATCAATGGCGTAC
CTAGTTAA

mRNA sequence

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Protein sequence

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MALMGGFARIGNNEVTILVNDGEKASDIDPQEAQQTLEIAEANLRKAQGKRQAIEANFALRQARTRVEAINGVPS

Clc09G10890 (gene) of Watermelon (cordophanus) v2 genome