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Clc09G10960 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G10960
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibonuclease P
Genome locationClcChr09:9709112..9710353
RNA-Seq ExpressionClc09G10960
SyntenyClc09G10960
Gene Ontology termsGO:0001682 - tRNA 5'-leader removal (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000172 - ribonuclease MRP complex (cellular component)
GO:0005655 - nucleolar ribonuclease P complex (cellular component)
GO:0004526 - ribonuclease P activity (molecular function)
GO:0033204 - ribonuclease P RNA binding (molecular function)
InterPro domainsIPR002759 - RNase P subunit Pop5/Rpp14/Rnp2-like
IPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061295.1 putative ribonuclease P/MRP protein subunit POP5 [Cucumis melo var. makuwa]3.8e-7390.26Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDLSGNTRACKNTAL+LD LKFEQYKLMVGH LPD+V +QM NCLEKI  LEN
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

XP_004139703.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]1.5e-7491.56Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVRFKNRYMV EVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQVKYVNPITK+CIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDLSGNTRACKNTAL+L+ LKFEQYKLMVGH LPD+VNLQM NCLEKI TLEN
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

XP_008461474.1 PREDICTED: probable ribonuclease P/MRP protein subunit POP5 [Cucumis melo]1.4e-7289.61Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDLSGNTRACKNTAL+LD LKFEQYKLMVGH LPD+V + M NCLEKI  LEN
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]3.0e-7086.36Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDL+GN+RACKNTAL++D+LKFEQYKLMVG R+ D VNLQM NCLEKI TL+N
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

XP_038899949.1 probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]1.1e-7795.45Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM RTISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDLSGNTRACKNTAL+LDKLKFEQYKLMVGHRLPD+VNLQM NCLEKI TLE+
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

TrEMBL top hitse value%identityAlignment
A0A1S3CEI9 Ribonuclease P6.9e-7389.61Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDLSGNTRACKNTAL+LD LKFEQYKLMVGH LPD+V + M NCLEKI  LEN
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

A0A5D3CDD4 Ribonuclease P1.8e-7390.26Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVRFKNRYMV EVLLDPNK+LKTDDPIIITQYNVSKAIKDSILLNFGECGFAS+LGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDLSGNTRACKNTAL+LD LKFEQYKLMVGH LPD+V +QM NCLEKI  LEN
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

A0A6J1CLH1 Ribonuclease P7.4e-6782.12Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVR++NRY++LEV+LDP KD  TDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV+YVNPITKLCIIR+S+EDYQ VWAAITM RTI NCPV+FN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITT
        LLDL+GNTRACKNTAL+ ++LKFEQYKLMVG RL DDVNLQM NCLEKI T
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITT

A0A6J1EVL4 Ribonuclease P4.2e-7085.71Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV+YVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDL+GN+RACKNTAL+LD+LKFEQYKLMVG R+ D VNLQM NCLEKI +L+N
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

A0A6J1IBH7 Ribonuclease P1.4e-7086.36Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MV FKNRY+V EV+LDPNKD+ TDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIR+SREDYQNVWAAITM R+ISNCPVVFN
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        LLDL+GN+RACKNTAL++D+LKFEQYKLMVG R+ D VNLQM NCLEKI TL+N
Subjt:  LLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

SwissProt top hitse value%identityAlignment
Q1JQ92 Ribonuclease P/MRP protein subunit POP52.6e-0829.6Show/hide
Query:  MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISN----C
        MVRFK+RY++ EV+  DP   L  +D ++ T       ++D+I    G  G A+    F V+Y+N  T + ++R  +E Y+ VW+A+    ++ N     
Subjt:  MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISN----C

Query:  PVVFNLLDLSGNTRACKNTALKLDK
        P   N L + G  R C+   ++ ++
Subjt:  PVVFNLLDLSGNTRACKNTALKLDK

Q54EP3 Probable ribonuclease P/MRP protein subunit POP59.5e-1130.51Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN
        MVR KNRY++ EV+   N+         + Q+ +S  +K+ +    GE  + +   + ++ YVNP T + IIR S E Y+++W A+T+  +    P+ F 
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFN

Query:  LLDLSGNTRACKNTALKL
        ++ + G+ R C+  A+K+
Subjt:  LLDLSGNTRACKNTALKL

Q6AWV1 Probable ribonuclease P/MRP protein subunit POP51.4e-4964.52Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVF
        MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQVKYVNPITKLCI+RSSRE+++ VW AIT+ ++I NCPV+ 
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVF

Query:  NLLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        NLLD+SG  RAC++TALK DK KFEQ        L ++   QM+  LEKI  LEN
Subjt:  NLLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN

Q969H6 Ribonuclease P/MRP protein subunit POP51.0e-0931.2Show/hide
Query:  MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISN----C
        MVRFK+RY++ E++  DP   L  DD ++      S  ++D+I    G  G A+    F V+Y+N  T + ++R  +E YQ VW+A+     + N     
Subjt:  MVRFKNRYMVLEVLL-DPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISN----C

Query:  PVVFNLLDLSGNTRACKNTALKLDK
        P  FN L + G  R C+   ++ ++
Subjt:  PVVFNLLDLSGNTRACKNTALKLDK

Q9UU90 Ribonuclease P/MRP protein subunit POP52.0e-1333.58Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTDDPII-----ITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNC
        MVRFK+RY++ EVL    K+   D P I     IT  ++SK I+  +  NFG+ G      S  VKY +P T   I+R SR+ ++  WAA+ + R +   
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTDDPII-----ITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNC

Query:  PVVFNLLDLSGNTRACKNTALKLDKLKFEQYKLM
        PV+  ++ +SG  +  +  A++ +K +     LM
Subjt:  PVVFNLLDLSGNTRACKNTALKLDKLKFEQYKLM

Arabidopsis top hitse value%identityAlignment
AT1G04635.1 ribonuclease P family protein / Rpp14 family protein9.6e-5164.52Show/hide
Query:  MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVF
        MV FKNRYM++EV LDP+KDL  +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSFQVKYVNPITKLCI+RSSRE+++ VW AIT+ ++I NCPV+ 
Subjt:  MVRFKNRYMVLEVLLDPNKDLKTD-DPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVF

Query:  NLLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN
        NLLD+SG  RAC++TALK DK KFEQ        L ++   QM+  LEKI  LEN
Subjt:  NLLDLSGNTRACKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTCTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGC
AATCAAGGACAGTATTCTTCTCAACTTTGGGGAATGTGGTTTTGCTTCCTCACTTGGATCTTTTCAAGTTAAGTATGTAAATCCGATCACGAAGTTGTGTATTATTAGAT
CCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGCGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTGGAAATACAAGGGCT
TGCAAAAACACCGCCTTGAAGCTCGACAAATTGAAGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATGATGTGAATCTGCAAATGCATAACTGTCTCGA
GAAGATTACAACTTTAGAAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGGTTTAAAAACCGATACATGGTGCTTGAAGTTCTCTTGGATCCCAATAAAGACCTTAAAACAGATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGC
AATCAAGGACAGTATTCTTCTCAACTTTGGGGAATGTGGTTTTGCTTCCTCACTTGGATCTTTTCAAGTTAAGTATGTAAATCCGATCACGAAGTTGTGTATTATTAGAT
CCTCCAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACTATGGCGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTGGAAATACAAGGGCT
TGCAAAAACACCGCCTTGAAGCTCGACAAATTGAAGTTTGAGCAATACAAGCTTATGGTTGGACATCGTCTACCAGATGATGTGAATCTGCAAATGCATAACTGTCTCGA
GAAGATTACAACTTTAGAAAACTGA
Protein sequenceShow/hide protein sequence
MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQVKYVNPITKLCIIRSSREDYQNVWAAITMARTISNCPVVFNLLDLSGNTRA
CKNTALKLDKLKFEQYKLMVGHRLPDDVNLQMHNCLEKITTLEN