CuGenDBv2

Gene ID	Clc09G11630
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	60S ribosomal protein L3
Genome location	ClcChr09:10359625..10360565
RNA-Seq Expression	Clc09G11630
Synteny	Clc09G11630
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000597 - Ribosomal protein L3 IPR009000 - Translation protein, beta-barrel domain superfamily IPR019926 - Ribosomal protein L3, conserved site IPR044892 - Ribosomal protein L3, domain 3, archaeal type superfamily IPR045077 - Ribosomal protein L3, archaeal/eukaryotic type

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4289346.1 unnamed protein product [Prunus armeniaca]

1.1e-34

68.47

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Query:  SQHLSEEVRRRFYKNWCKSKKKL-FTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSG
        +QHLSEEV+RRFYKNWCKSKKK    ++ V GGTIAQKV++   FFEKQ+P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G
Subjt:  SQHLSEEVRRRFYKNWCKSKKKL-FTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSG

Query:  GTRVSTHPAMI
            + HPA +
Subjt:  GTRVSTHPAMI

OEL23779.1 60S ribosomal protein L3 [Dichanthelium oligosanthes]

6.3e-33

57.34

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVT
        +QHLSEEVRRRFYKNWCKSKKK FTK                                 + V GGTIA KVDY   FFEK+VPV AVFQ+DE ID+IGVT
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVT

Query:  KGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        KGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  KGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

RVW75860.1 60S ribosomal protein L3 [Vitis vinifera]

3.9e-35

48.28

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Query:  CWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTK----------------------------------------------LMVVGGTIAQ
        CW+ +D  W S F + + +QHLSEEV+RRFYKNWCKSKKK FTK                                              + V GG +A+
Subjt:  CWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTK----------------------------------------------LMVVGGTIAQ

Query:  KVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        KVDY  GFFEKQ+P+ A+FQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  KVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

RWW01576.1 hypothetical protein GW17_00035382 [Ensete ventricosum]

4.8e-33

56.64

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVT
        +QHLSEEVRRRFYKNWCKSKKK FTK                                   V GGT+AQKVD+   FFEKQVP+ AVFQ+DE ID+IGVT
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVT

Query:  KGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        KGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  KGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

XP_022156015.1 60S ribosomal protein L3 [Momordica charantia]

6.3e-33

53.42

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNWCKSKKK FTK                                                   + V GGTIAQKVDY  GFFEKQV
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        PV AVFQ+DE IDLIGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

TrEMBL top hits

e value

%identity

Alignment

A0A438GUI8 60S ribosomal protein L3

1.9e-35

48.28

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Query:  CWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTK----------------------------------------------LMVVGGTIAQ
        CW+ +D  W S F + + +QHLSEEV+RRFYKNWCKSKKK FTK                                              + V GG +A+
Subjt:  CWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTK----------------------------------------------LMVVGGTIAQ

Query:  KVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        KVDY  GFFEKQ+P+ A+FQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  KVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

A0A444DTY5 Uncharacterized protein

2.3e-33

56.64

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVT
        +QHLSEEVRRRFYKNWCKSKKK FTK                                   V GGT+AQKVD+   FFEKQVP+ AVFQ+DE ID+IGVT
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVT

Query:  KGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        KGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  KGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

A0A5C7HAT7 Uncharacterized protein

3.0e-33

59.12

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYE
        +QHLSE+VRRRFY+NWCKSKKK FTK                           + V GGTIAQKVDY  GFFEKQVPV AVFQ+DE ID+IGVTKGKGYE
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------LMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYE

Query:  GVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        GV+TRWGVT LPRKT+RG  K  C G    + HPA +
Subjt:  GVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

A0A6J1DTJ8 60S ribosomal protein L3

3.0e-33

53.42

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNWCKSKKK FTK                                                   + V GGTIAQKVDY  GFFEKQV
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        PV AVFQ+DE IDLIGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

A0A6J5VK41 Uncharacterized protein

5.6e-35

68.47

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Query:  SQHLSEEVRRRFYKNWCKSKKKL-FTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSG
        +QHLSEEV+RRFYKNWCKSKKK    ++ V GGTIAQKV++   FFEKQ+P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G
Subjt:  SQHLSEEVRRRFYKNWCKSKKKL-FTKLMVVGGTIAQKVDYTNGFFEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSG

Query:  GTRVSTHPAMI
            + HPA +
Subjt:  GTRVSTHPAMI

SwissProt top hits

e value

%identity

Alignment

P17094 60S ribosomal protein L3-1

1.9e-32

48.45

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNW KSKKK FT                                                   ++ + GGTIAQKVD+   FFEKQ+
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

P22738 60S ribosomal protein L3-2

6.1e-31

47.2

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEE+RRRFYKNW KSKKK FT+                                                   + + GG IA+KVDY    FEKQV
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        PV A+FQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

P35684 60S ribosomal protein L3

2.9e-33

49.69

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNWCKSKKK FTK                                                   + + GGTIA KVDY   FFEK++
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK---------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        PV AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

Q4R5Q0 60S ribosomal protein L3

2.8e-23

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK--------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQVP
        ++H+S+E +RRFYKNW KSKKK FTK                                                  + V GGT+A+K+D+     E+QVP
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK--------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQVP

Query:  VGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        V  VF +DE ID+IGVTKGKGY+GV +RW    LPRKTHRG RK  C G    + HPA +
Subjt:  VGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

Q6BXM5 60S ribosomal protein L3

2.1e-23

40.25

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFTK------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVG
        ++HLSEEVRRRFYKNW KSKKK FTK                                                + V GG+++ KVD+    FEK V V 
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFTK------------------------------------------------LMVVGGTIAQKVDYTNGFFEKQVPVG

Query:  AVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMIE
        +VF++DE +D+  VTKG G+EGV  RWG   LPRKTHRG RK  C G    + HPA ++
Subjt:  AVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMIE

Arabidopsis top hits

e value

%identity

Alignment

AT1G43170.1 ribosomal protein 1

1.4e-33

48.45

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNW KSKKK FT                                                   ++ + GGTIAQKVD+   FFEKQ+
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

AT1G43170.2 ribosomal protein 1

1.4e-33

48.45

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNW KSKKK FT                                                   ++ + GGTIAQKVD+   FFEKQ+
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

AT1G43170.3 ribosomal protein 1

1.4e-33

48.45

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNW KSKKK FT                                                   ++ + GGTIAQKVD+   FFEKQ+
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

AT1G43170.4 ribosomal protein 1

1.4e-33

48.45

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNW KSKKK FT                                                   ++ + GGTIAQKVD+   FFEKQ+
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

AT1G43170.5 ribosomal protein 1

1.4e-33

48.45

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Query:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV
        +QHLSEEVRRRFYKNW KSKKK FT                                                   ++ + GGTIAQKVD+   FFEKQ+
Subjt:  SQHLSEEVRRRFYKNWCKSKKKLFT---------------------------------------------------KLMVVGGTIAQKVDYTNGFFEKQV

Query:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI
        P+ AVFQ+DE ID+IGVTKGKGYEGV+TRWGVT LPRKTHRG RK  C G    + HPA +
Subjt:  PVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRK--CSGGTRVSTHPAMI

Sequences

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CDS sequence

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ATGTTCACAGGAAATTTGAGCACCCAAGGCACGGGTCCCTTGGATTCATCCAAGGAAATGAGTAGCTCGTCACTAGGGAAAAGTGAAGGTTTTCCCAAAGGATGGCGCAA
GCAAGCCAAGCAGGCTGACTGCCTTTTCAGGTATTGTTGGATATGTGAAGACCCCATGTGGTCTTCATGCTTTGGGCACTGTATGGTCTCACAGCATTTGAGTGAGGAAG
TAAGGAGAAGGTTCTATAAGAACTGGTGCAAGTCTAAGAAGAAGCTTTTCACTAAGTTAATGGTGGTTGGTGGTACAATTGCTCAGAAGGTGGACTATACCAATGGATTC
TTTGAGAAGCAAGTTCCAGTAGGAGCTGTTTTCCAAAGAGATGAGAAAATTGACCTTATTGGTGTGACCAAAGGTAAAGGTTATGAAGGTGTCATCACTCGTTGGGGTGT
TACATGTCTCCCTCGTAAGACTCATAGGGGTTTTAGGAAGTGCAGTGGCGGCACAAGAGTGTCGACACATCCGGCAATGATAGAGGGCCAAGAGAAGTGTCGTGATGCGA
CCGAGGAGGACGGTGCATCATCCAACACACCAAGATAA

mRNA sequence

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Protein sequence

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MFTGNLSTQGTGPLDSSKEMSSSSLGKSEGFPKGWRKQAKQADCLFRYCWICEDPMWSSCFGHCMVSQHLSEEVRRRFYKNWCKSKKKLFTKLMVVGGTIAQKVDYTNGF
FEKQVPVGAVFQRDEKIDLIGVTKGKGYEGVITRWGVTCLPRKTHRGFRKCSGGTRVSTHPAMIEGQEKCRDATEEDGASSNTPR

Clc09G11630 (gene) of Watermelon (cordophanus) v2 genome