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Clc09G11645 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G11645
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUPF0505 protein C16orf62 homolog
Genome locationClcChr09:10364172..10364669
RNA-Seq ExpressionClc09G11645
SyntenyClc09G11645
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0032456 - endocytic recycling (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0005768 - endosome (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0030906 - retromer, cargo-selective complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038898824.1 VPS35 endosomal protein-sorting factor-like isoform X1 [Benincasa hispida]2.9e-0983.72Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
XP_038898826.1 VPS35 endosomal protein-sorting factor-like isoform X2 [Benincasa hispida]2.9e-0983.72Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
XP_038898827.1 VPS35 endosomal protein-sorting factor-like isoform X3 [Benincasa hispida]2.9e-0983.72Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
XP_038898828.1 VPS35 endosomal protein-sorting factor-like isoform X4 [Benincasa hispida]2.9e-0983.72Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
XP_038898829.1 VPS35 endosomal protein sorting factor-like isoform X5 [Benincasa hispida]2.9e-0983.72Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFRPRDYSAEAKLFLL RDRAEIHPLSVQSSQQ    ++RIL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
TrEMBL top hitse value%identityAlignment
A0A1S3BHH2 UPF0505 protein C16orf62 homolog isoform X18.5e-0774.42Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
A0A1S3BI34 UPF0505 protein C16orf62 homolog isoform X28.5e-0774.42Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
A0A5A7SG80 Retrovirus-related Pol polyprotein from transposon TNT 1-948.5e-0774.42Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
A0A5D3DHC0 Retrovirus-related Pol polyprotein from transposon TNT 1-948.5e-0774.42Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFR RDY+AEAKLFLL RDRAEIHPLSV SSQQ    +++IL
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
A0A6J1IWD8 UPF0505 protein C16orf62 homolog1.1e-0672.09Show/hide
Query:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
        MEFRPRDYSAEAKLFLL RDRAE  PLSV SSQQ    +++I+
Subjt:  MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTCAGACCTCGGGATTACAGTGCCGAAGCAAAGCTGTTTCTGCTTCAGCGGGATCGTGCAGAAATTCATCCTCTGTCTGTTCAATCGTCTCAGCAGGGAGGGAG
GTGGGAGAATAGGATTTTATGGATCATGATATTTCGTGGAAACAACAAGTGGGCAAATAGTGAAGGAAAACCATGTGAGTATCAGTTGTTGCTGTGA
mRNA sequenceShow/hide mRNA sequence
TTAACCCAATCAAATTTGGGTCGACCATTAAAAGAAATAATTCAAGAAAAACTCCAATTTCCACCCAGTGCTACTTTGGATCGAATGCACACTCTATCGTGAGGGGAGCG
GAATCTCAAGTCTTGAATGGAGTTCAGACCTCGGGATTACAGTGCCGAAGCAAAGCTGTTTCTGCTTCAGCGGGATCGTGCAGAAATTCATCCTCTGTCTGTTCAATCGT
CTCAGCAGGGAGGGAGGTGGGAGAATAGGATTTTATGGATCATGATATTTCGTGGAAACAACAAGTGGGCAAATAGTGAAGGAAAACCATGTGAGTATCAGTTGTTGCTG
TGA
Protein sequenceShow/hide protein sequence
MEFRPRDYSAEAKLFLLQRDRAEIHPLSVQSSQQGGRWENRILWIMIFRGNNKWANSEGKPCEYQLLL