CuGenDBv2

Gene ID	Clc09G12243
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome location	ClcChr09:10997097..11000989
RNA-Seq Expression	Clc09G12243
Synteny	Clc09G12243
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit

Homology

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GenBank top hits

e value

%identity

Alignment

AAN64402.1 NADH dehydrogenase subunit F, partial [Vancouveria hexandra]

1.4e-11

81.25

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Query:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

AFB74228.1 NADH dehydrogenase subunit 5, partial [Anredera baselloides]

1.4e-11

92.86

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

WP_017299734.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea nodulosa]

1.4e-11

72.73

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Query:  PTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        P SI   F+ +V    V+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  +FL
Subjt:  PTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

WP_194055775.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. LEGE 06152]

1.4e-11

72.73

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Query:  PTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        P SI   F+ +V    V+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  +FL
Subjt:  PTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

YP_009570404.1 NADH-plastoquinone oxidoreductase subunit 5 [Anredera cordifolia]

1.4e-11

92.86

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

TrEMBL top hits

e value

%identity

Alignment

A0A3S8V6I6 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

7.0e-12

81.25

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Query:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

A0A411JMV2 NAD(P)H dehydrogenase subunit 5

7.0e-12

92.86

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

A0A4D6E9L9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

7.0e-12

81.25

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Query:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

H6T8N2 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)

7.0e-12

92.86

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Q8HTM3 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)

7.0e-12

81.25

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Query:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

SwissProt top hits

e value

%identity

Alignment

A0A382 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

9.4e-14

84.44

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Query:  VVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        +V   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  VVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Q06R83 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

4.2e-14

90.48

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Q2MIE0 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

7.2e-14

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Query:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Q32126 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

5.5e-14

88.1

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T A++KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Q9TLA3 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

4.2e-14

90.48

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Query:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        T AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Arabidopsis top hits

e value

%identity

Alignment

ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein

4.3e-14

89.74

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Query:  VSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        ++KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Subjt:  VSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

ATMG00060.1 NADH dehydrogenase subunit 5C

2.5e-09

67.5

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Query:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        AV KSAQ   H W PDAMEGPTP+SA IHAATMV   +F+
Subjt:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

ATMG00513.1 NADH dehydrogenase 5A

2.5e-09

67.5

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Query:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        AV KSAQ   H W PDAMEGPTP+SA IHAATMV   +F+
Subjt:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

ATMG00665.1 NADH dehydrogenase 5B

2.5e-09

67.5

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Query:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL
        AV KSAQ   H W PDAMEGPTP+SA IHAATMV   +F+
Subjt:  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL

Sequences

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CDS sequence

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ATGCCAGCAATTGAGCGTTTGACGTCCGTCGCCCCTCTACCGTCGTTCGCGTGTAGGAGTCACGCCGAATCTCTCTCTCCCATTTTGCGTTGTCCGACGTCCATT
TGTCACTGCTTTTCGCCGGTCGTTGCCACTAGTGCAGTTTCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATT
TCAGCTCTTATACATGCTGCTACGATGGTAGCAGTGAGAATTTTCTTACAAAATTACGCATGCATAGAGTAG

mRNA sequence

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Protein sequence

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MPAIERLTSVAPLPSFACRSHAESLSPILRCPTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFLQNYACIE

Clc09G12243 (gene) of Watermelon (cordophanus) v2 genome