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Clc09G12465 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G12465
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr09:11339733..11340294
RNA-Seq ExpressionClc09G12465
SyntenyClc09G12465
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038877524.1 uncharacterized protein LOC120069782 [Benincasa hispida]1.4e-1541.43Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF--------------ERIELLENELPKYRLIE------------HIST
        MLSNAC+ F WN+E+ C++VEK+VFD    S+PNAK +++K F  YDELSI+F              ++    +  L   RL              +I+T
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF--------------ERIELLENELPKYRLIE------------HIST

Query:  TGNMDETFSKTPTSRRVEASNTSRGRKKKRNNFQSEMLDI
           M+E F  TP SR   +SN  RG K+KR  FQSEMLDI
Subjt:  TGNMDETFSKTPTSRRVEASNTSRGRKKKRNNFQSEMLDI

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]2.7e-1442.45Show/hide
Query:  FGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFERIELLENELPKYRLIEHISTTGNMDETFSKTPTSRRVEASNTSRGRKKKRNNFQ
        F WNEE+ CV VE+++FD W+ S+PNAK M  K FP+YD+LS +F + +  +   P+ R  E       +DE  ++  T R    + +SRG K+KR++FQ
Subjt:  FGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFERIELLENELPKYRLIEHISTTGNMDETFSKTPTSRRVEASNTSRGRKKKRNNFQ

Query:  SEMLDI
         EM+DI
Subjt:  SEMLDI

XP_038889264.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.4e-1567.92Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF
        MLSNACN FGWN+E+ CV VEK+VFD W+WS+PN K +R+K FP+ DELSI+F
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]9.3e-1540Show/hide
Query:  GWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF----------ERIELLENELPKYRLIEHISTTGNMDETFSKTPTSRRVEASNTSRG
        GWNEE+ CV VE+++FD W+WS+PNAK M NK FP+YD+LS +F          E   +++   P+ R  E       +DE  ++  T R    + +SR 
Subjt:  GWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF----------ERIELLENELPKYRLIEHISTTGNMDETFSKTPTSRRVEASNTSRG

Query:  RKKKRNNFQSEMLDI
         K+ R++FQ EM+DI
Subjt:  RKKKRNNFQSEMLDI

XP_038896734.1 uncharacterized protein At2g29880-like [Benincasa hispida]1.6e-1466.04Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF
        MLSNACN+FGWN+E+ CV+VEK+VFD W+ S+PNAK +R+K  P+Y+ELSI+F
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein4.8e-0952.83Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF
        M    C+ FGWN+E  C+  EK+VFD W+ S+P AK + NK FP+YDELS +F
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF

A0A5A7UFV5 Retrotransposon protein2.2e-0954.9Show/hide
Query:  ACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFER
        AC+ FGWN++  C+  EKDVFD+W+  +P AK ++NK FP YDELS +FE+
Subjt:  ACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFER

A0A5D3BUW3 Retrotransposon protein7.9e-1244.58Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFERIELLENELPKYRLIEHISTTGNMDETFS
        M   AC+ FGWN+EY C+  EK +FD W+WS+P AK + NKLFP YDEL+ +F                 H  TTG   ETF+
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFERIELLENELPKYRLIEHISTTGNMDETFS

A0A5D3BZB7 Retrotransposon protein1.7e-0956.6Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF
        M  + C+ FGWN+E  C+  EKDVFD W  S+P AKS+ NK FP+YDELS +F
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF

A0A5D3C1J4 Retrotransposon protein1.3e-0954.72Show/hide
Query:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF
        M    C+ FGWN+E  C+ VEK+VFD W+ S+P AK + NK FP+YDELS +F
Subjt:  MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAGTAACGCATGCAACGACTTTGGTTGGAATGAGGAGTACAATTGTGTGGATGTAGAGAAGGACGTGTTTGATGCATGGATTTGGTCCTATCCCAATGCGAAGAG
TATGAGGAACAAACTCTTCCCTAACTATGATGAACTTTCCATCTTATTTGAAAGAATCGAGCTACTGGAGAATGAGTTGCCAAAATATCGATTGATTGAGCACATATCAA
CAACAGGCAACATGGATGAAACTTTCTCAAAGACACCTACCAGTAGGCGTGTCGAAGCTAGTAACACGTCAAGAGGAAGAAAGAAGAAGAGGAATAACTTCCAATCTGAA
ATGCTTGACATTGGTACGGACAATAATGAGCGTCTAGGAAAATCGAATGGAGAAGCTTGTATCCTGGCAGAAAGAGAAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAGTAACGCATGCAACGACTTTGGTTGGAATGAGGAGTACAATTGTGTGGATGTAGAGAAGGACGTGTTTGATGCATGGATTTGGTCCTATCCCAATGCGAAGAG
TATGAGGAACAAACTCTTCCCTAACTATGATGAACTTTCCATCTTATTTGAAAGAATCGAGCTACTGGAGAATGAGTTGCCAAAATATCGATTGATTGAGCACATATCAA
CAACAGGCAACATGGATGAAACTTTCTCAAAGACACCTACCAGTAGGCGTGTCGAAGCTAGTAACACGTCAAGAGGAAGAAAGAAGAAGAGGAATAACTTCCAATCTGAA
ATGCTTGACATTGGTACGGACAATAATGAGCGTCTAGGAAAATCGAATGGAGAAGCTTGTATCCTGGCAGAAAGAGAAATATGA
Protein sequenceShow/hide protein sequence
MLSNACNDFGWNEEYNCVDVEKDVFDAWIWSYPNAKSMRNKLFPNYDELSILFERIELLENELPKYRLIEHISTTGNMDETFSKTPTSRRVEASNTSRGRKKKRNNFQSE
MLDIGTDNNERLGKSNGEACILAEREI