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Clc09G12490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G12490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosome maturation factor
Genome locationClcChr09:11388674..11393011
RNA-Seq ExpressionClc09G12490
SyntenyClc09G12490
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136199.1 uncharacterized protein LOC101212292 isoform X2 [Cucumis sativus]7.7e-6091.3Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
        QFHGFK PS+QL EIKADGDELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
XP_008466004.1 PREDICTED: uncharacterized protein LOC103503567 isoform X1 [Cucumis melo]4.5e-6091.37Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
        QFHGFKRPS+QLAEIKA DG ELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
XP_011652641.1 uncharacterized protein LOC101212292 isoform X1 [Cucumis sativus]1.1e-6192.03Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
        QFHGFK PS+QLAEIKADGDELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
XP_023554684.1 uncharacterized protein LOC111811877 isoform X1 [Cucurbita pepo subsp. pepo]3.8e-5987.68Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD++PADD +RKKHSPSSSSI+ YDGQDD+K SKSFRFSF SPS PRQE LVHAIPILTIICFLILYIFSH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
        QFHGFK PSEQLAEIKADGDELI+PK+GNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
XP_038888243.1 uncharacterized protein LOC120078100 [Benincasa hispida]1.5e-5889.13Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDEVPADDQ+RKKHSPSSSSI +YDGQDDD+ASKSFRFSF SP  PRQEK VHAIPILTIICFLILY  SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
        QFHGFKRP+EQL EIKADGDELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
TrEMBL top hitse value%identityAlignment
A0A0A0LE94 Uncharacterized protein3.7e-6091.3Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
        QFHGFK PS+QL EIKADGDELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRN
A0A1S3CQ78 uncharacterized protein LOC103503567 isoform X12.2e-6091.37Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
        QFHGFKRPS+QLAEIKA DG ELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
A0A1S3CQJ2 uncharacterized protein LOC103503567 isoform X21.6e-5890.65Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
        QFHGFKRPS+QL EIKA DG ELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
A0A5A7T6T2 Uncharacterized protein1.6e-5890.65Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSDE PADDQ+RKKHSPSSSSIL+Y GQDDDK+SKSFRFSF SPS PRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
        QFHGFKRPS+QL EIKA DG ELILPKKGNILAIQ  RN
Subjt:  QFHGFKRPSEQLAEIKA-DGDELILPKKGNILAIQKRRN
A0A6J1HRQ8 uncharacterized protein LOC111466893 isoform X12.0e-5886.43Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA
        MQRQSLGSPVSKLHGHGAGAKSD +PADDQ+RKKHSPSSSSI+ YDGQDDDK SKSFRFSF SPS PRQE LVHAIPILTIICFLILYI SH+PSQSDLA
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLA

Query:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRNTD
        QFH FKRPSEQLAEIKADGDELI+PK+GNILAIQ  R  +
Subjt:  QFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKRRNTD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G35470.1 unknown protein4.0e-2243.71Show/hide
Query:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSP-SSSSILDYDGQDDDKASKSFRFSFSSPSL---PRQEKLVHAIPILTIICFLILYIFSHSPSQ
        MQR SL S  SKLH +G G K D    DD +    SP SSSS +DYD  +          S  SP +    +QEKLVH IPILT+ICF+ILY+ S++PSQ
Subjt:  MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSP-SSSSILDYDGQDDDKASKSFRFSFSSPSL---PRQEKLVHAIPILTIICFLILYIFSHSPSQ

Query:  SDLAQFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKR-RNTDRRADF-SPGLERVKCRRRRGGD
        SDLAQF+GF RPS+ L     +GDE+    + + L+I+   RN      F +  L R +   R+  D
Subjt:  SDLAQFHGFKRPSEQLAEIKADGDELILPKKGNILAIQKR-RNTDRRADF-SPGLERVKCRRRRGGD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGGCAATCTCTAGGCTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCAAAATCCGATGAAGTTCCGGCCGACGATCAAAGGCGGAAGAAACAC
TCTCCATCTTCCTCCTCAATTCTCGACTACGACGGACAAGACGACGATAAAGCCTCTAAATCTTTCCGATTCTCATTTTCGTCTCCTTCTCTACCACGGCAGGAG
AAGTTAGTTCACGCCATACCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCTCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCACGGATTC
AAGCGTCCTTCAGAACAATTAGCAGAAATCAAAGCTGATGGGGACGAACTTATATTACCAAAGAAAGGCAACATTCTGGCGATTCAAAAACGTAGAAACACCGAT
CGACGCGCCGATTTTTCGCCGGGACTTGAGCGCGTGAAGTGCCGGCGCCGGCGCGGCGGAGATGGAAAGGGAATCCAGCTGGAGTATATATTTAGTGTTATTTTC
GATTTTCCGAATCGGACCGTTACGGCATCGGGAGAAGGGCCAAGACGCCAGCTGGAAAATGCTGTAGTCGCTGACGGTATCAGTGCTTGCTGCCATTGCCCATCC
CCACCTCTTCTTTGTGAAGCCCTAGATCTACCGTCGTGCCTTTTGTCTCAATCACTTTGCTCATCGTCACAGACTTGTTGCCCTACCTATCACCTTCGACGGTTG
AGTCTGTGCACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGGCAATCTCTAGGCTCACCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCAAAATCCGATGAAGTTCCGGCCGACGATCAAAGGCGGAAGAAACAC
TCTCCATCTTCCTCCTCAATTCTCGACTACGACGGACAAGACGACGATAAAGCCTCTAAATCTTTCCGATTCTCATTTTCGTCTCCTTCTCTACCACGGCAGGAG
AAGTTAGTTCACGCCATACCTATCCTCACCATTATCTGCTTCCTCATCCTTTACATCTTCTCTCACAGTCCTTCGCAGTCAGATTTGGCTCAGTTTCACGGATTC
AAGCGTCCTTCAGAACAATTAGCAGAAATCAAAGCTGATGGGGACGAACTTATATTACCAAAGAAAGGCAACATTCTGGCGATTCAAAAACGTAGAAACACCGAT
CGACGCGCCGATTTTTCGCCGGGACTTGAGCGCGTGAAGTGCCGGCGCCGGCGCGGCGGAGATGGAAAGGGAATCCAGCTGGAGTATATATTTAGTGTTATTTTC
GATTTTCCGAATCGGACCGTTACGGCATCGGGAGAAGGGCCAAGACGCCAGCTGGAAAATGCTGTAGTCGCTGACGGTATCAGTGCTTGCTGCCATTGCCCATCC
CCACCTCTTCTTTGTGAAGCCCTAGATCTACCGTCGTGCCTTTTGTCTCAATCACTTTGCTCATCGTCACAGACTTGTTGCCCTACCTATCACCTTCGACGGTTG
AGTCTGTGCACTTAAATCGGTCGTCATTGTCCAGAACCCTGCGTCGCTCAAATCCACCGCACCTCGAAGCTATCATCCAAAACCCTGTGTCATTGACCGTCATCG
TCCTTCCTTCATGCGCTTAGAGAGAGAAAAAGAAAGGGAGAAGCTAATGGAGAGGAGAGAGAGACAAAAACTGCAACAGGAGGGGAAACCATGAATGGAGGAGGA
AGAAAAAGAGTGGGGAAGAAGAGGAAGAAACGTGAGAAATTTTGGGGGGAAATGAGAAAATGAGGGATTTAAACAATTTTTTCTTTTCTAAATTTTTTAAAAAAG
AAATTAACGATTACATGGATACACAAAACCCTAGGCTATGCATGGATGAGAGAAAACACAAAACCATAGGCTTTTATTTTTTCTTATTTTGTTTTGTTTTAATAT
AGTGGATGAGGTCTTAATTGTTAAATACACCACAACATTAGTAGAAATTTGTAATTCATTGGACTATTTATGTAATAAATGGAATGTAGAAGACAATTGTGTAAT
ATAGGCCTACAATTAAGGCCTTATATGTAGAAAGCCTTTAATAGTTATTATGTTTTTCTTTTTTACAACAGTTGTGGGATGAGAGATCGAACTTTCAATTTCGAG
AGAGTTTGTGCTGCCAATTATTGATATCGAAATTTGGTAGCAAGTATGAATTTGTAATGTTTGGGAG
Protein sequenceShow/hide protein sequence
MQRQSLGSPVSKLHGHGAGAKSDEVPADDQRRKKHSPSSSSILDYDGQDDDKASKSFRFSFSSPSLPRQEKLVHAIPILTIICFLILYIFSHSPSQSDLAQFHGF
KRPSEQLAEIKADGDELILPKKGNILAIQKRRNTDRRADFSPGLERVKCRRRRGGDGKGIQLEYIFSVIFDFPNRTVTASGEGPRRQLENAVVADGISACCHCPS
PPLLCEALDLPSCLLSQSLCSSSQTCCPTYHLRRLSLCT