CuGenDBv2

Gene ID	Clc09G12530
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Protein Ycf2
Genome location	ClcChr09:11467376..11467883
RNA-Seq Expression	Clc09G12530
Synteny	Clc09G12530
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QJR53001.1 hypothetical protein RF2 [Herpetospermum pedunculosum]

7.2e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

YP_009468904.1 hypothetical chloroplast RF2 [Gynostemma compressum]

7.2e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

7.2e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

7.2e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

7.2e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

3.5e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

A0A6H0ESM3 Protein Ycf2

3.5e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

A0A6H0ET42 Protein Ycf2

3.5e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

A0A6H0EV63 Protein Ycf2

3.5e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

A0A6M3RUH1 Protein Ycf2

3.5e-56

100

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

9.1e-54

95.5

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI GSASGGNMLWGGGPAYGVKSIRSKKK +NINLIDLISIIPNPINRI FSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

B1NWJ3 Protein Ycf2

1.4e-54

95.5

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEE+ GSASGGNMLWGGGPAYGVKSIRSKKK WNINLIDLISIIPNPINRI FSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

Q14F97 Protein Ycf2

2.0e-53

95.5

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI GSASGGNMLWGGGPAYGVKSIRSKKK  NINLIDLISIIPNPINRI FSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

Q49KT6 Protein Ycf2

1.3e-52

91.89

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        MIPSYM+ELRKLLDRYPTSELNSFWLKNLFLVALE+LGDSLEEI GSASGGNMLWGGGPAYG KSIRSKKK WNINLIDLISIIPNPI+RI FS+ TRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

Q589A6 Protein Ycf2

2.9e-52

92.79

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Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL
        M PSYMIELRKLLDRYPTSE N FWLKNLFLVALEQLGDSLEEIWGSASGGNM  GGGPAYGVKSIRS KKD+NINLIDLISIIPNPINRI FSRNTRHL
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHL

Query:  SHTSKEIYSLI
        SHTSKEIYSLI
Subjt:  SHTSKEIYSLI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

6.3e-50

89.47

Show/hide

Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNT
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI G  SGGNMLWGG PAYGVKSIRSKKKD  IN   +IDLISIIPNPINRI FSRNT
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNT

Query:  RHLSHTSKEIYSLI
        RHLSHTSKEIYSLI
Subjt:  RHLSHTSKEIYSLI

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

6.3e-50

89.47

Show/hide

Query:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNT
        MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGD LEEI G  SGGNMLWGG PAYGVKSIRSKKKD  IN   +IDLISIIPNPINRI FSRNT
Subjt:  MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNIN---LIDLISIIPNPINRIAFSRNT

Query:  RHLSHTSKEIYSLI
        RHLSHTSKEIYSLI
Subjt:  RHLSHTSKEIYSLI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCCACATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATT
AGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGA
ATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTCATTG
ATAAGTGGTGTCTTCAAATTTTCTCTTTAA

mRNA sequence

Show/hide mRNA sequence

ACATCTGAGATCGCCAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATA
GTGAGTTACAGACAGAGTTCGAAAAGGTCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCCACATCTGAACTGAATTCTTTC
TGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATATGGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTA
TGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTGGAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCCCATCAATCGAATCGCTTTTTCGAGAAATACGA
GACATCTAAGTCATACAAGTAAAGAGATATATTCATTGATAAGTGGTGTCTTCAAATTTTCTCTTTAA

Protein sequence

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MIPSYMIELRKLLDRYPTSELNSFWLKNLFLVALEQLGDSLEEIWGSASGGNMLWGGGPAYGVKSIRSKKKDWNINLIDLISIIPNPINRIAFSRNTRHLSHTSKEIYSL
ISGVFKFSL

Clc09G12530 (gene) of Watermelon (cordophanus) v2 genome