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Clc09G12655 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G12655
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationClcChr09:11656007..11656357
RNA-Seq ExpressionClc09G12655
SyntenyClc09G12655
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR025525 - hAT-like transposase, RNase-H fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038019.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]4.3e-1345Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
KAA0052389.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]5.1e-1445.83Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVK-DLGTNVYLLE
            T F +  L  ++YLLE
Subjt:  RVEKTSFVK-DLGTNVYLLE
TYK03730.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]1.9e-1345Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
TYK16593.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]1.9e-1345Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
TYK28895.1 putative transposase [Cucumis melo var. makuwa]3.3e-1345Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
TrEMBL top hitse value%identityAlignment
A0A5A7UFZ0 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.5e-1445.83Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVK-DLGTNVYLLE
            T F +  L  ++YLLE
Subjt:  RVEKTSFVK-DLGTNVYLLE
A0A5D3BX83 Zinc finger BED domain-containing protein RICESLEEPER 3-like9.4e-1445Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
A0A5D3CR68 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.1e-1345Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
A0A5D3CXI1 Zinc finger BED domain-containing protein RICESLEEPER 3-like9.4e-1445Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
A0A5D3DZY7 Putative transposase1.6e-1345Show/hide
Query:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK
        +LY+AIVL+PR KL+F+++C K+FFGP+ A+ M + VEQ  RRLFHEY S  RS    G SSTST+    ++ +D +ID    E +GE+F Y+ I + F+
Subjt:  MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRS---IGTSSTSTSMVLEINNVDVDIDM---EALGENFNYN-IRQTFK

Query:  RVEKTSFVKDLG-TNVYLLE
            T F +     ++YLLE
Subjt:  RVEKTSFVKDLG-TNVYLLE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTATATTGCCATTGTATTGAATCCAAGATCAAAGTTGAAGTTTTTAACTTACTGTTTTAAGAGTTTTTTCGGGCCAAAGACTGCTAAATATATGGCAGATTCAGT
TGAACAAGCTTTGAGACGTCTCTTTCATGAGTACAAAAGTGTTGTTCGTAGTATAGGTACTAGTAGTACTAGCACATCAATGGTCTTAGAGATAAATAATGTTGATGTTG
ACATTGATATGGAAGCATTAGGTGAGAATTTTAACTATAATATTAGACAAACGTTCAAAAGGGTTGAGAAAACAAGTTTTGTTAAAGATTTAGGGACTAATGTATATTTG
TTGGAAGAACTTCCGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTATATTGCCATTGTATTGAATCCAAGATCAAAGTTGAAGTTTTTAACTTACTGTTTTAAGAGTTTTTTCGGGCCAAAGACTGCTAAATATATGGCAGATTCAGT
TGAACAAGCTTTGAGACGTCTCTTTCATGAGTACAAAAGTGTTGTTCGTAGTATAGGTACTAGTAGTACTAGCACATCAATGGTCTTAGAGATAAATAATGTTGATGTTG
ACATTGATATGGAAGCATTAGGTGAGAATTTTAACTATAATATTAGACAAACGTTCAAAAGGGTTGAGAAAACAAGTTTTGTTAAAGATTTAGGGACTAATGTATATTTG
TTGGAAGAACTTCCGGAGTAA
Protein sequenceShow/hide protein sequence
MLYIAIVLNPRSKLKFLTYCFKSFFGPKTAKYMADSVEQALRRLFHEYKSVVRSIGTSSTSTSMVLEINNVDVDIDMEALGENFNYNIRQTFKRVEKTSFVKDLGTNVYL
LEELPE