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Clc09G13210 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G13210
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr09:13364263..13364661
RNA-Seq ExpressionClc09G13210
SyntenyClc09G13210
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025773.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-1271.01Show/hide
Query:  VEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKERLEAASEESILSTSI
        VE   +A  VAACEAAK+ VWLRKFL DLEVV NMS SITL CDNSG V NSK R EA S ESIL+ SI
Subjt:  VEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKERLEAASEESILSTSI

KAA0040367.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1179.59Show/hide
Query:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        +A  +AACEAAKEVVWLRKFL DLEVVPNM++SITL CDNSG V NSKE
Subjt:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

KAA0046366.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-1181.63Show/hide
Query:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        +A  VAACEAAKE VWLRKFL DLEVVPNMS SITL CDNSGVV NS+E
Subjt:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

KAA0056412.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1188.89Show/hide
Query:  VAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        VAACEAAKEVVWLRKFL DLEVVPNM++SITL CDNSGVV NSKE
Subjt:  VAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-1179.59Show/hide
Query:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        +A  VAACEAAKE VWL+KFL DLEVVPNM++SITL CDNSGVV NSKE
Subjt:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

TrEMBL top hitse value%identityAlignment
A0A5A7TW60 Gag/pol protein1.7e-1181.63Show/hide
Query:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        +A  VAACEAAKE VWLRKFL DLEVVPNMS SITL CDNSGVV NS+E
Subjt:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

A0A5A7ULH5 Gag/pol protein2.2e-1170.37Show/hide
Query:  VEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        ++   +A  VAACEAAKE VWL+KFLTDLEVVPNM + ITL CDNSG VENS+E
Subjt:  VEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

A0A5D3CCW7 Gag/pol protein1.2e-1271.01Show/hide
Query:  VEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKERLEAASEESILSTSI
        VE   +A  VAACEAAK+ VWLRKFL DLEVV NMS SITL CDNSG V NSK R EA S ESIL+ SI
Subjt:  VEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKERLEAASEESILSTSI

A0A5D3DI92 Gag/pol protein1.3e-1179.59Show/hide
Query:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        +A  +AACEAAKEVVWLRKFL DLEVVPNM++SITL CDNSG V NSKE
Subjt:  KAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

A0A5D3DZ05 Gag/pol protein5.8e-1288.89Show/hide
Query:  VAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE
        VAACEAAKEVVWLRKFL DLEVVPNM++SITL CDNSGVV NSKE
Subjt:  VAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGVVENSKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCATGCCTCACCAAGCAAGATGCCTCACACACACTCTTGGTGGCTCGGCTACTCAAGGCCTCCAACACATACTCCCACCTAAGCCACCTTTCTTGTCGGCCACA
CACTATCGACTACCCATGTCAAGGGCTCTCGGCCACTTCCATCTCACTACCCGTTCTAGCCATCTCTCTCAAGAATGTTGAGATTGAAAGTAAGGCTTACAATGTAGCTG
CTTGTGAAGCTGCTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACTTGGAAGTTGTTCCTAACATGTCAATGTCCATCACTCTATCTTGTGATAATAGTGGTGTT
GTGGAAAATTCCAAGGAGCGCCTAGAAGCCGCTAGCGAGGAGAGCATATTGAGTACAAGTATCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCATGCCTCACCAAGCAAGATGCCTCACACACACTCTTGGTGGCTCGGCTACTCAAGGCCTCCAACACATACTCCCACCTAAGCCACCTTTCTTGTCGGCCACA
CACTATCGACTACCCATGTCAAGGGCTCTCGGCCACTTCCATCTCACTACCCGTTCTAGCCATCTCTCTCAAGAATGTTGAGATTGAAAGTAAGGCTTACAATGTAGCTG
CTTGTGAAGCTGCTAAGGAGGTTGTTTGGCTTAGGAAGTTTTTGACAGACTTGGAAGTTGTTCCTAACATGTCAATGTCCATCACTCTATCTTGTGATAATAGTGGTGTT
GTGGAAAATTCCAAGGAGCGCCTAGAAGCCGCTAGCGAGGAGAGCATATTGAGTACAAGTATCATTTGA
Protein sequenceShow/hide protein sequence
MDACLTKQDASHTLLVARLLKASNTYSHLSHLSCRPHTIDYPCQGLSATSISLPVLAISLKNVEIESKAYNVAACEAAKEVVWLRKFLTDLEVVPNMSMSITLSCDNSGV
VENSKERLEAASEESILSTSII