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Clc09G13260 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G13260
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr09:13381095..13382611
RNA-Seq ExpressionClc09G13260
SyntenyClc09G13260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038876528.1 uncharacterized protein LOC120068959 [Benincasa hispida]9.3e-1645.45Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFSL----PLLEKVSTRVRSWFVRTLSY
        MIF    R+S  FV+ VL+ F ELSGLVAN GK  M  A +   + +    +M   L SLP+RYL LP + G+  +    PL+++++ R+RSW  R+LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFSL----PLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQ-SLVFR
        AGR Q ++SVL+SFQ S+V R
Subjt:  AGRTQFIQSVLKSFQ-SLVFR

XP_038880484.1 uncharacterized protein LOC120072144 [Benincasa hispida]7.1e-1646.96Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRF----SLPLLEKVSTRVRSWFVRTLSY
        MIF    R+S  FV+ VL+ F ELS LVAN GKS M  A +  G+A+    +M   L SLP+RYLGL  ++GR       PL+++++T +R+W  R+LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRF----SLPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQ
        AGR Q + SVL+SFQ
Subjt:  AGRTQFIQSVLKSFQ

XP_038888122.1 uncharacterized protein LOC120078021 [Benincasa hispida]4.9e-1748.7Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFSL----PLLEKVSTRVRSWFVRTLSY
        MIF    R+S  FV+ VL+ F  LSGLVAN G S M    +  G+A+    FM F L SL +RYLGLP ++GR  +    PL+++++ R+RSW  R+LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFSL----PLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQ
        AGR Q I+SVL+SFQ
Subjt:  AGRTQFIQSVLKSFQ

XP_038891664.1 uncharacterized protein LOC120081057 [Benincasa hispida]3.4e-1850.43Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRF----SLPLLEKVSTRVRSWFVRTLSY
        MIF V  RNS  F++ VL  F ELSGLVAN GKS M  A +  G+A+    +M   L SLP+RYLGLP ++ R       PL+++++ R+RSW VR+LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRF----SLPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQ
        AGR Q ++SVL+SFQ
Subjt:  AGRTQFIQSVLKSFQ

XP_038895791.1 uncharacterized protein LOC120083957 [Benincasa hispida]2.3e-1447.22Show/hide
Query:  RNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSYAGRTQFI
        R+S  FV+ VL+ F  LSGLVAN GKS M    M  G+A+    FM F L SLP+RYLGLP + GR       PL++++  R+R+W   +L + GR Q +
Subjt:  RNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSYAGRTQFI

Query:  QSVLKSFQ
        +SVL+SFQ
Subjt:  QSVLKSFQ

TrEMBL top hitse value%identityAlignment
A0A2N9GF95 Reverse transcriptase domain-containing protein9.3e-1442.4Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY
        MIF   + +S   V+  L  F+ELSGL  N  KS + CA++      + L  + F +  LP+RYLG+P I+GR S    +PL+EK++ R+ SW  R LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQSLVFRSHYIL
        AGR Q I SVL S Q + + S +IL
Subjt:  AGRTQFIQSVLKSFQSLVFRSHYIL

A0A2N9HLD2 Reverse transcriptase domain-containing protein9.3e-1442.4Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY
        MIF   + +S   V+  L  F+ELSGL  N  KS + CA++      + L  + F +  LP+RYLG+P I+GR S    +PL+EK++ R+ SW  R LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQSLVFRSHYIL
        AGR Q I SVL S Q + + S +IL
Subjt:  AGRTQFIQSVLKSFQSLVFRSHYIL

A0A2N9IRZ4 Reverse transcriptase domain-containing protein9.3e-1442.4Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY
        MIF   + +S   V+  L  F+ELSGL  N  KS + CA++      + L  + F +  LP+RYLG+P I+GR S    +PL+EK++ R+ SW  R LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQSLVFRSHYIL
        AGR Q I SVL S Q + + S +IL
Subjt:  AGRTQFIQSVLKSFQSLVFRSHYIL

A0A2N9ISY3 Reverse transcriptase domain-containing protein9.3e-1442.4Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY
        MIF   + +S   V+  L  F+ELSGL  N  KS + CA++      + L  + F +  LP+RYLG+P I+GR S    +PL+EK++ R+ SW  R LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQSLVFRSHYIL
        AGR Q I SVL S Q + + S +IL
Subjt:  AGRTQFIQSVLKSFQSLVFRSHYIL

A0A2N9IWM4 Reverse transcriptase domain-containing protein9.3e-1442.4Show/hide
Query:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY
        MIF   + +S   V+  L  F+ELSGL  N  KS + CA++      + L  + F +  LP+RYLG+P I+GR S    +PL+EK++ R+ SW  R LS+
Subjt:  MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFS----LPLLEKVSTRVRSWFVRTLSY

Query:  AGRTQFIQSVLKSFQSLVFRSHYIL
        AGR Q I SVL S Q + + S +IL
Subjt:  AGRTQFIQSVLKSFQSLVFRSHYIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.4e-0629.71Show/hide
Query:  SLPIRYLGLPFISGRFSL----PLLEKVSTRVRSWFVRTLSYAGRTQFIQSVLKSFQSLVFRSHYILIVMIVLLQPCDTMIYTQSWSALE-ETQSPIYFC
        +LP+RYLGLP ++ + +     PL+EK+  R+  W  R LS+AGR Q I SV+ S  +    +  +    I   +  D++  +  WS  E  T+      
Subjt:  SLPIRYLGLPFISGRFSL----PLLEKVSTRVRSWFVRTLSYAGRTQFIQSVLKSFQSLVFRSHYILIVMIVLLQPCDTMIYTQSWSALE-ETQSPIYFC

Query:  SFFFKPRRTLGEVLSSSTELNSRGSHHNATSHLSSSSW
        S    P+   G  + S  E N +GS  + + + +  SW
Subjt:  SFFFKPRRTLGEVLSSSTELNSRGSHHNATSHLSSSSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTTAGTGTTGGTAACCGCAACTCCTCGACTTTTGTGCAGTCTGTTTTGAGTGGGTTTCAAGAGTTATCTGGTCTTGTTGCCAATGATGGTAAAAGTTTGATGGT
TTGTGCTAGCATGTTTATTGGTCAAGCTAAGAGGTTTTTAAAGTTCATGGTTTTCCTGTTGGTTTCTCTCCCTATTCGTTATCTTGGCTTACCTTTTATTTCTGGAAGGT
TTTCATTGCCTTTGTTGGAGAAAGTTTCCACCCGTGTGAGGAGTTGGTTTGTTAGGACTCTGTCTTATGCTGGTCGGACACAGTTTATTCAGTCTGTCTTGAAAAGCTTT
CAATCGCTAGTGTTTAGGAGTCATTACATCTTAATTGTCATGATCGTCCTTCTCCAACCGTGCGACACCATGATTTACACTCAATCATGGTCAGCCTTAGAGGAAACTCA
ATCCCCAATCTACTTTTGCTCATTCTTTTTTAAGCCTCGGCGGACCTTAGGCGAGGTTCTTTCATCCTCAACCGAATTGAACTCACGTGGAAGTCATCATAATGCAACGT
CGCATCTCTCTTCATCATCTTGGTTCCCAACAACACGACTCCAATTCTTCTACGTCACTTCGGAAGTTCACCAAGATGTCAACAATGAACTATTGAGTCCCCATGACAAT
GCTTCAGTATACTCTTGCCTCAGCAAAAGGGACTATTTCACCCATCAACTTGGCCTACATAATGACCACAAAAGCATATTCTCTGAGCAGCACATAATGGTGCACCCCTC
TGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTTAGTGTTGGTAACCGCAACTCCTCGACTTTTGTGCAGTCTGTTTTGAGTGGGTTTCAAGAGTTATCTGGTCTTGTTGCCAATGATGGTAAAAGTTTGATGGT
TTGTGCTAGCATGTTTATTGGTCAAGCTAAGAGGTTTTTAAAGTTCATGGTTTTCCTGTTGGTTTCTCTCCCTATTCGTTATCTTGGCTTACCTTTTATTTCTGGAAGGT
TTTCATTGCCTTTGTTGGAGAAAGTTTCCACCCGTGTGAGGAGTTGGTTTGTTAGGACTCTGTCTTATGCTGGTCGGACACAGTTTATTCAGTCTGTCTTGAAAAGCTTT
CAATCGCTAGTGTTTAGGAGTCATTACATCTTAATTGTCATGATCGTCCTTCTCCAACCGTGCGACACCATGATTTACACTCAATCATGGTCAGCCTTAGAGGAAACTCA
ATCCCCAATCTACTTTTGCTCATTCTTTTTTAAGCCTCGGCGGACCTTAGGCGAGGTTCTTTCATCCTCAACCGAATTGAACTCACGTGGAAGTCATCATAATGCAACGT
CGCATCTCTCTTCATCATCTTGGTTCCCAACAACACGACTCCAATTCTTCTACGTCACTTCGGAAGTTCACCAAGATGTCAACAATGAACTATTGAGTCCCCATGACAAT
GCTTCAGTATACTCTTGCCTCAGCAAAAGGGACTATTTCACCCATCAACTTGGCCTACATAATGACCACAAAAGCATATTCTCTGAGCAGCACATAATGGTGCACCCCTC
TGGGTGA
Protein sequenceShow/hide protein sequence
MIFSVGNRNSSTFVQSVLSGFQELSGLVANDGKSLMVCASMFIGQAKRFLKFMVFLLVSLPIRYLGLPFISGRFSLPLLEKVSTRVRSWFVRTLSYAGRTQFIQSVLKSF
QSLVFRSHYILIVMIVLLQPCDTMIYTQSWSALEETQSPIYFCSFFFKPRRTLGEVLSSSTELNSRGSHHNATSHLSSSSWFPTTRLQFFYVTSEVHQDVNNELLSPHDN
ASVYSCLSKRDYFTHQLGLHNDHKSIFSEQHIMVHPSG