; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G13280 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G13280
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionvacuolar protein sorting-associated protein 55 homolog
Genome locationClcChr09:13512043..13515059
RNA-Seq ExpressionClc09G13280
SyntenyClc09G13280
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0005768 - endosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8055554.1 hypothetical protein FH972_012387 [Carpinus fangiana]2.2e-4774.42Show/hide
Query:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAV
        SCLH  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVL+PM LLFFAGSDSSSLFSES ++WVNATKFLTGAS +GS+AIPAILKHA +IGWGA+
Subjt:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAV

Query:  ALDFSSLLAFVVAILCYLWMSNEEDYNVL
        A++FSS   FV+AI+CY+ M++E+DYNVL
Subjt:  ALDFSSLLAFVVAILCYLWMSNEEDYNVL

XP_004150170.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus]5.4e-4670.9Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV

XP_008448742.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]7.1e-4670.9Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV

XP_021599879.1 vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta]7.1e-4672.87Show/hide
Query:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAV
        +CL   K+  L ILVSGGI+LQ LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSLFSES++SWVNATKFLTGASAVGSIAIPAILKHA +IGWGA+
Subjt:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAV

Query:  ALDFSSLLAFVVAILCYLWMSNEEDYNVL
        A++ SS   FV+AI+CY+ M++E+ Y++L
Subjt:  ALDFSSLLAFVVAILCYLWMSNEEDYNVL

XP_022157395.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia]4.9e-5582.84Show/hide
Query:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMI
        M DLG C HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+L+PM LLFFAGSD+SSL SES DSWVNATKFLTGAS VGSIAIP ILKHA++I
Subjt:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMI

Query:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNVL
        GWGA+ALD SSLL FVVAILCYLWMSNE+DYN L
Subjt:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNVL

TrEMBL top hitse value%identityAlignment
A0A0A0L5B3 Uncharacterized protein2.6e-4670.9Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV

A0A1S3BJT4 vacuolar protein sorting-associated protein 55 homolog3.4e-4670.9Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV

A0A5D3CIX3 Vacuolar protein sorting-associated protein 55-like protein3.4e-4670.9Show/hide
Query:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM
        L   L +CL M KV  L ILVSGGIV+Q LACALYNNWWP+LSV+MYVL+PM LLFFAGSDSSSL+++S+DSW+NATKFLTGAS VGSIAIP ILKHA +
Subjt:  LMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADM

Query:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV
        IGWGA+A+D SS + FVVAILC++ MS ++DY++
Subjt:  IGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNV

A0A5N6R6S4 Uncharacterized protein1.1e-4774.42Show/hide
Query:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAV
        SCLH  K+  L ILVSGGIVLQ LACALYNNWWP+L+V+MYVL+PM LLFFAGSDSSSLFSES ++WVNATKFLTGAS +GS+AIPAILKHA +IGWGA+
Subjt:  SCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAV

Query:  ALDFSSLLAFVVAILCYLWMSNEEDYNVL
        A++FSS   FV+AI+CY+ M++E+DYNVL
Subjt:  ALDFSSLLAFVVAILCYLWMSNEEDYNVL

A0A6J1DSZ0 vacuolar protein sorting-associated protein 55 homolog2.4e-5582.84Show/hide
Query:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMI
        M DLG C HMSK+VTLG+LVSGGIVLQFLAC LY NWWPLLSV+MY+L+PM LLFFAGSD+SSL SES DSWVNATKFLTGAS VGSIAIP ILKHA++I
Subjt:  MTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMI

Query:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNVL
        GWGA+ALD SSLL FVVAILCYLWMSNE+DYN L
Subjt:  GWGAVALDFSSLLAFVVAILCYLWMSNEEDYNVL

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 551.8e-0727.78Show/hide
Query:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPM-SLLFFAGS--DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVA
        ++K+++L   ++ G +L  L+CAL++N++PL  +++++L P+ + +F AG+   +S   S+SS++  +   FLTG      IA+P +  H  +IG  +  
Subjt:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPM-SLLFFAGS--DSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVA

Query:  LDFSSLLAFVVAILCYLWMSNEEDYN
        +     L    +I+ + W   ++D+N
Subjt:  LDFSSLLAFVVAILCYLWMSNEEDYN

Q54VP1 Vacuolar protein sorting-associated protein 55 homolog7.4e-0630.09Show/hide
Query:  GIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCY
        G++   LAC + ++ +P++ V  Y L P   +     DS   FS    ++ +   FLTG       AIP IL H+D+I   A+A   +  +     I+ +
Subjt:  GIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCY

Query:  LWM---SNEEDYN
        LW     N+ED N
Subjt:  LWM---SNEEDYN

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog3.4e-4368.5Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

Q9UUH1 Vacuolar protein sorting-associated protein 551.1e-0626.4Show/hide
Query:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPM-SLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALD
        + K++ L  +++ G +L  L+CAL+ NW+PLL V+ ++L P+ +LL    S S     E   + ++  +F  GA+     A+P +  +  +IG  A  + 
Subjt:  MSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPM-SLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWGAVALD

Query:  F--SSLLAFVVAILCYLWMSNEEDY
            S++  V+ +    ++ +EE++
Subjt:  F--SSLLAFVVAILCYLWMSNEEDY

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein2.4e-4468.5Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein2.4e-4468.5Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein2.4e-4468.5Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.4 Vacuolar protein sorting 55 (VPS55) family protein2.4e-4468.5Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED

AT1G32410.5 Vacuolar protein sorting 55 (VPS55) family protein2.4e-4468.5Show/hide
Query:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG
        L +CL M K+  L ILVS GIVLQ LACAL+NNWWP+LSV+MYVL+PM LLFF GSDS+SLF+ES +SW+NA KFLTGASAVGS+AIP+ILKHA +IGWG
Subjt:  LGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTGASAVGSIAIPAILKHADMIGWG

Query:  AVALDFSSLLAFVVAILCYLWMSNEED
        A+ALD SS + F+VAIL Y+ + +  D
Subjt:  AVALDFSSLLAFVVAILCYLWMSNEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCCGCCGCTGAGCTCCTTCAATCCCGTTTTCTCAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGCTGCTT
GCACATGAGCAAAGTTGTAACATTAGGAATCTTGGTTTCTGGAGGAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTA
TGTATGTTCTTATCCCAATGTCTTTGCTGTTTTTTGCTGGCTCTGATAGTTCTTCACTATTTTCCGAATCGAGTGACAGTTGGGTGAATGCGACGAAATTTTTAACGGGC
GCTTCGGCAGTTGGAAGCATTGCCATACCTGCAATTTTGAAGCATGCTGACATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGCTTTTGTAGTGGC
CATTTTATGTTACCTATGGATGAGTAATGAAGAAGACTACAATGTACTCTAA
mRNA sequenceShow/hide mRNA sequence
GTTGAAAGTGAAACATTTCCTAATCGAAATTACAGGCTGAGCTAAGGGATAGTTTGAAGCAAACAGATGAAAGTTGAAGCGACTCGCTCCAACTCTTCCCAATCCGCCGC
TGAGCTCCTTCAATCCCGTTTTCTCAGTGAGAAGGATTACCTGATGACAGACTTGGGAAGCTGCTTGCACATGAGCAAAGTTGTAACATTAGGAATCTTGGTTTCTGGAG
GAATTGTGTTGCAGTTTTTGGCATGTGCTTTGTACAATAACTGGTGGCCATTGCTGAGTGTGGTTATGTATGTTCTTATCCCAATGTCTTTGCTGTTTTTTGCTGGCTCT
GATAGTTCTTCACTATTTTCCGAATCGAGTGACAGTTGGGTGAATGCGACGAAATTTTTAACGGGCGCTTCGGCAGTTGGAAGCATTGCCATACCTGCAATTTTGAAGCA
TGCTGACATGATAGGCTGGGGAGCAGTTGCACTGGACTTCTCTTCCCTTTTAGCTTTTGTAGTGGCCATTTTATGTTACCTATGGATGAGTAATGAAGAAGACTACAATG
TACTCTAAGGTGTGTGTTTCATGAAGTACTCGTGTGGAAGAAATCATTTTCCTGGAGGTCCATTCTCGTAAGCGAACTGGAGCAAGCTATCATTAGATAAACAAATCTTT
CTAAAGCAATTCGACTCAGCCCTATCATACACCCATTTAAAAGTTTTTCTTGAGTTTCTCTATATCAACCAACAATCCAATAGTAATGATTTGAAGCACCATTTTTTTAC
ACTATTACAGAAACCAATTGCATGGATATGTAAAATATAGGAATGTTGAAAGGGA
Protein sequenceShow/hide protein sequence
MKVEATRSNSSQSAAELLQSRFLSEKDYLMTDLGSCLHMSKVVTLGILVSGGIVLQFLACALYNNWWPLLSVVMYVLIPMSLLFFAGSDSSSLFSESSDSWVNATKFLTG
ASAVGSIAIPAILKHADMIGWGAVALDFSSLLAFVVAILCYLWMSNEEDYNVL